Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00417 ATGCATGGATTTTCGGAAGTGCCAGTAGAACTTAGAACTTCCAGAAGCTTTTACTATATTAGGACTTTAAGTATGGCAGGAAGAAATCGCTCATCACGCCACATTGATGGTTACCGAGTTTCCCGTGATGTCCCTAGATCCTACGTAGAACGAGTACCAGCACCCCTGCCTATTCATCCTGCAGCTTTGGAGGAGGAGCTTGAATTGCAGCATAGGGAAATGCAGAGAATAATTTCTGATAATCGCATGGTGATTGATGATAATACAATACTTCAAAGGGAGTTATCAGCTGCAAAAGAAGAAATTCACAGATTGAACCAGGCTATACCCAAAGTTCTGTCTGAGAAAGAAGCACAATCCAGGGAGTTACTTGAAAGAGGTTTGAAACTAGAAGCTGAGCTTCGTGCTTCTGAGCCTTTAAAGTCTGAGGTTCTGCATTTAAGAGGTGAGATTCAGAAATTGAATAATTTGAAGCAAGATTTGTCTGCTAAAGTCCAAAGCCTCACAAAGGATGTTACTCGATTGCAAGCTGAAAATCAGCAGCTAAATTCTATGAGAGCAGATATGGATGGATTGCTCAAGGAGCTTATTGAGGCCAGGAGGGCTTATGAATATGAAAAGAAATCCAATGAAGAACAAAATGAACAAAAGCAAGCAATGGAGAAGAACCTTGTTTCAATGGCTCGTGAAATAGAGAAACTGCGAGCAGAGAAGCTCAACTTAGAGAGAGCACGGGGATTAGGTGCTGAGGGTTATGGGATCTTGAAAAGAAGTCCTGAACTGAGATACGCAGGTGGTCCATATGGTAATAACTATGGTAATTCATGGGCACCATATGAGAAGCGTAGCCGACGTTAA 858 41.96 MHGFSEVPVELRTSRSFYYIRTLSMAGRNRSSRHIDGYRVSRDVPRSYVERVPAPLPIHPAALEEELELQHREMQRIISDNRMVIDDNTILQRELSAAKEEIHRLNQAIPKVLSEKEAQSRELLERGLKLEAELRASEPLKSEVLHLRGEIQKLNNLKQDLSAKVQSLTKDVTRLQAENQQLNSMRADMDGLLKELIEARRAYEYEKKSNEEQNEQKQAMEKNLVSMAREIEKLRAEKLNLERARGLGAEGYGILKRSPELRYAGGPYGNNYGNSWAPYEKRSRR 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4522805 4525204 - Cp4.1LG13g06640.1 Cpe13g00417 479615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00417 285 Coils Coil 88 108 - -
Cpe13g00417 285 Coils Coil 144 244 - -
Cpe13g00417 285 PANTHER PROTEIN FLX-LIKE 2 25 283 IPR040353 -
Cpe13g00417 285 Coils Coil 113 133 - -
Cpe13g00417 285 MobiDBLite consensus disorder prediction 263 285 - -
Cpe13g00417 285 PANTHER MYOSIN-LIKE PROTEIN 25 283 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00417 - - - csv:101218774 438.343
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00417 Cpe-Chr13:4522805 Cpe20g00888 Cpe-Chr20:7933474 1.06E-40 dispersed
Cpe01g01789 Cpe-Chr1:14324530 Cpe13g00417 Cpe-Chr13:4522805 7.75E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g307 . Blo16g01063 . Bda11g01148 Bpe13g01347 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01148 . . . Bma06g00758 . . . . . Car04g01990 Car15g00842 Cpe13g00417 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003698 1 1 1 1 1 1 3 1 1 1 1 1 0 1 1 0 1 0 2 1 1 1 1 2 1 1 1 5 6 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00417 Cpe_Chr13 FPKM 7.568058 7.531814 12.895134 12.781256 9.985701 10.433008 10.318661 14.268532 14.067213 14.029433