Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00418 ATGGCTACAACAAACGACATGGGAAAGACGATCGAGATTTTTGGATTCCCCGCACAGGTCACCGCCGACGAGGTGAAGGAATTTATCGAGAATCACACGGGAGACGGAACGGTGTTGACGGTGAGGATTTCCAAACCCAATGACGAAAAAGCCCGGTTCACATTCGCCACGGTCCGGTTCACCAGCAAACTCGGGGGTGAGTATGTGGTGGCGCAGGCGGCGGCGGAGAAGCGTCTGTGGTTCGGAAGTCTGTATCTGAAGGCTAGAAAAGTGGAGAGGGAGATCAAGACGACGGCGGCGGCGAGAGTTCACGGCGAGTTGGAGAGAATGGAAAACGTGAATGTGCAGTGGGGAAACCTGGTTTCGAAGGAGGAAATGAAGGTGATTTGGAAGGGGGAAAAATGGAGTGTGGAATATGGAATTGGAGTAAGGAAATTGGGGTTTTATTTGAGCTATGAGGGTGTTGAGTACAAAATGGAGCTCTGTTTTGAGAATATTCTCGGATTGCAGGGTGCTCCACGGATTTTCAAGAAAGCTCCATTGTCTTCTTCCTCTCGATTATCTTCAGAGGAATCCACTGGTTTCCGTTGGATCAGAGATGTGGATTTCACTCCATCTTCTTGCATCGGACAGTCTTTTGCTCTGTGTTTGGAACTTTCTCATGGAGATCAGCTTCCTTCTTTCTTTCAAACATTGGTCGGCTACAAAGAAAGCTATGCTCCATTCATTCTACACACAGGTTCTTCTTTATCCTCCATTTCAAATCTGGTACCTATCATTACTCCACCTCAAGGCTTTCATATCTCCTATAAAATTTTGTTCCAAATCAATGCCCTGCTTCAACATGGTTATCTTCCTGGACCAGCGCTGGATAATGAATTTTTCCGACTGGTCGATCCCAGTCGATTTCGTTCTGATTATGTCGAATATGCCCTAGACAAACTTTTTCATTTGAAGGAATGTTGCTATGAGCCACAAAAATGGCTCAAGCAGCAATATCTGTCATTCTACAGCTCTAAGCAGCTTCCATGGAAACCTAATGTTTCTTTGGATGATGGCCTGGTCTATGTGCACAGGGTTCAAATTACGCCTACTAAAGTGTACTTCCGTGGTCCGGAGGCGAATCTCTCTAATAGAGTAGTCCGTCATTTTATTGATGATGTTGATAATTTTCTTCGTGTGTCTTTTGTTGATGAGGAGTTAGATAAACTTCATTCCATTGATTTATCTCCGCGTACATCTGCTGAAAATGATTTAAGAACTAGAGTTTATGATAGAGTACTGTCGGTGTTAAGAAATGGTATAGTTATTGGTGATAAGAAGTTTGAGTTTCTTGCTTTCTCGGCGAGTCAACTACGGGAAAATTCTTGTTGGATGTTTGCTTCGAGGAAGGGGCTTAGTGCAGCAGATATCAGAGCGTGGATGGGTGACTTTCGTCAGATAAGAAATGTGGCAAAATATGCTGCTCGACTAGGCCAATCTTTTGGCTCATCCAGAAGAACTTTGTGTGTTGAACAACATGAAATTGAAGTTATTTCTGATGTTGAAGTTGAAACCAATAAAATTACTTATTGTTTCTCTGATGGGATTGGAAAAATATCTGGAACATTGGCTGAGAAGGTTGCTGAAAAATGTGGTTTAATCAGCCATACACCATCTGCCTTTCAGATCCGATATGCTGGATACAAGGGCGTTGTTGCTATCGACCCAACATCGACGAAGAAATTGTCGTTACGAAAGAGTATGTTGAAGTATACGTCGCTCGACACCCAAGTCGATGTCTTGTCATGGAGCAAGTACCAACCCTGTTTTCTTAACCGTCAGGTGATAAACCTTCTGTCCACTCTTGGAATTAAGGACCGCGTTTTTGTGAAAAAACAAAAGGAGGCTATAGATCAACTGGATTCCATTTTAGAAGATCCGTCGAGGGCATTAGAAGTGTTGGAGTTGATGTCCCCAGGGGAAATGACTAGTATTCTTAAGGAATTGCTTTTGCTTTACAAGCCAAATGAAGAGCCTTTTCTAAATATGATGCTACGAACATTTCGAGCAGCTAAATTGTTAGATTTGAGGACTAAATCAAGGATATTTGTTCCTAAGGGAAGGACAATGATGGGTTGCCTGGACGAAACCCGAACGTTAGAATACGGGCAGGTGTTTGTTCATTGCTCTCTCCCTGGAAGATCAAGCGAAAGTAATTTTGTTGTTAAGGGTAAAGTGGTGGTTGCTAAGAATCCCTGTTTACACCCAGGGGACGTGCGTTTGCTCGACGCTGTTGATGTGAAAGCTCTGCATCATATGGTGGATTGTGTTGTTTTTCCACAGAAAGGGGAAAGACCTCACCCAAATGAATGTTCTGGGAGTGATTTGGATGGTGACTTGTACTTTGTTGGTTGGGATCCGGAGCTGACTCGTATTAAACCAGTTAAACCTATGAGTTACGAGCCCGCACCAACTATGCGGTTGGATCACGATGTCACAATGGGGGAAGTGCAGGAATACTTGGTCAAGTACATGGTGAATGATGGTCTTGGAGGCATTGCAAATGCTCACACTGTGTTTGCAGATCAGAAGCCTAAAAAGGCAATGACTGCTGAATGTATTAAACTTGCAAAATTATTCTCCATTGCTGTTGACTTCCCCAAGACCGGTGTGCCAGCAAACTTTCCACACAATCTTCGTGTTCGTGAGTATCCAGATTTCATGGAGAAGCCCGACAAGCCGACTTATGTATCGAATGGTGTTCTTGGGAAGCTTTTTCGAGGAGTGAAAGATGTTTCTTCCGATGTCAACACCGTTGAAATCTTCTCTAGGGAAGTTGCTACCAAGTGCTACGATCCAGACATGGAAGTAGATGGTTTTGAGGATTACTTGAGCGAAGCTTTTGAGTACAAAGCCAGGTACGACTTCAAATTGGGGAACCTCATGGATTATTATGGTATCAAAACAGAACCTGAATTAATTAGTGGAAATATTTTGAGAATGGCCAAGTCTTTTGATAAAAGGAATGACATGGAACAAATTAGCCTTGCCATGAAATCACTAAGAAAAGAGGCAAGGTCTTGGTTCAATGAGAAAGGAAGTAAGTCTGCATACGACGAGGACGACAACAAAGATGAGGAATATGCAAAAGCATCTGCTTGGTACCGTGTCACGTATCATCCAGATTATTGGGGTCGTTACAATGAAGGTATGCAAAGAGATCATTTTTTGAGTTTCCCATGGTGCGTTTCTGACAAACTTATTCAAATCAAAAGAGAGAAGACATGCTTGGTAAATTTTTCACCGGTACTAACTTTTCAAGACTAG 3309 43.0 MATTNDMGKTIEIFGFPAQVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTSKLGGEYVVAQAAAEKRLWFGSLYLKARKVEREIKTTAAARVHGELERMENVNVQWGNLVSKEEMKVIWKGEKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENILGLQGAPRIFKKAPLSSSSRLSSEESTGFRWIRDVDFTPSSCIGQSFALCLELSHGDQLPSFFQTLVGYKESYAPFILHTGSSLSSISNLVPIITPPQGFHISYKILFQINALLQHGYLPGPALDNEFFRLVDPSRFRSDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSKQLPWKPNVSLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHSIDLSPRTSAENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKGLSAADIRAWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYCFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSMLKYTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVKALHHMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMRLDHDVTMGEVQEYLVKYMVNDGLGGIANAHTVFADQKPKKAMTAECIKLAKLFSIAVDFPKTGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVATKCYDPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKRNDMEQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKDEEYAKASAWYRVTYHPDYWGRYNEGMQRDHFLSFPWCVSDKLIQIKREKTCLVNFSPVLTFQD 1102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4528129 4532310 - Cp4.1LG13g06620.1 Cpe13g00418 479616

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00418 1102 PANTHER RNA-DEPENDENT RNA POLYMERASE 8 1093 - -
Cpe13g00418 1102 PANTHER RNA-DEPENDENT RNA POLYMERASE 8 1093 IPR007855 GO:0003968
Cpe13g00418 1102 Pfam RNA dependent RNA polymerase 362 923 IPR007855 GO:0003968
Cpe13g00418 1102 CDD RRM_SF 11 77 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00418 K11699 RDR, RDRP; RNA-dependent RNA polymerase [EC:2.7.7.48] - csv:101205704 1772.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00074 Cpe-Chr1:443271 Cpe13g00418 Cpe-Chr13:4528129 0 dispersed
Cpe01g00075 Cpe-Chr1:448900 Cpe13g00418 Cpe-Chr13:4528129 0 dispersed
Cpe01g01851 Cpe-Chr1:15768640 Cpe13g00418 Cpe-Chr13:4528129 9.48E-50 dispersed
Cpe13g00418 Cpe-Chr13:4528129 Cpe18g00835 Cpe-Chr18:7713205 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g507 . . . . . . . . . . . Cma04g00091 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g01742 . . . . . . . Cmo15g00938 . . . Car15g00840 Cpe13g00418 . Bhi12g00954 . . . Hepe02g2614 . Lcy10g1379 Cla01g00645 Cam01g0673 Cec01g0664 Cco01g0691 Clacu01g0661 Cmu01g0634 Cre09g1871 Lsi09g00694 . Chy09g00814 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003921 0 1 0 0 0 2 2 1 2 1 2 2 2 2 3 2 2 0 2 2 2 2 1 2 2 2 1 4 1 0 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00418 Cpe_Chr13 FPKM 13.131455 19.475025 18.099209 14.288806 17.684193 19.218843 18.006033 24.492729 22.613564 17.727066