Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00425 ATGTCTTTCGCCGCCACCCCTCTCTCCATCCTCCTCCTCCTCTTCTTCTTCTTCTTCACATCTCCTCTGTCTCCGGCCGCCGCCCAACTGCCGCCGAAACCCACCAATTTCTCCGCCTTCTCGATATCCCAATCCCCATGGCGGCCGACCCAGAATCTCATTCTCTTCTCCCCCAACTCCCTTTTCGCCGCCGGCTTTCGGCTACTACCAAAAAGCTCCAATCTCTTCGTCTTCTCTGTTTGGTACTTCAACATCTCAACGGACAACGTCGTCTGGTCAGCCAACCATCTTTCTCCGGTCAACCGCTCAGCGGCTTTGGTCATCACGCGCACCGGCCAGCTCCATCTCGACGACGGTTCCGGTCGCAATCTCTGGCCTTCTAACAGTAATGTTTCTGCAAATCCAAATTCAACCCAATTAATCCTTCGCAACGATGGTGATTTGATTTACGGCACATGGGAAAGCTTCCAATTCCCCACCAATACTATCTTGCCTAACCAGACATTAAATGGAACCACCATCGTCTCCAACAACGGCAAATATGCGTTTGAAAACTCTGTTAATTTGACGTTTGGTGCAGATAGGTACTGGACCTCTGGAAACCCATTCCAGATTTTCCTGATCGGAGGTCAAATCATCATAAACAATCAAACCCCAATTTTCCCTTCTGATTTTAACTCGACCCGGCTGCGGAAATTGGTGGTCGACGATGATGGAAACCTCAAGATTTTCAGCTTCAACCCAAGTCTCCGGCGGTGGGATGTCGTTTGGCAAGCACATATAGAGTTGTGTGAGATCTTTCATACTTGTGGCCCAAATTCCATCTGTATGAGTACTGGCAGTTACAACTCCACCTACTGTGTCTGTGCTCCCGGATTTATCCCCGATCCTCGCGGCGGAGCACGGCAAGGATGCCACCGGAAACTCAACATATCAAAGACACCCAAGTTTCTTCAACTGGATTTTGTGAGTTTCAGAGGTGGAGTTAAACAAATCTCCCTGCAAACCCCAAATATTTCTGTCTGCCAAGCGAATTGCTTGAAGAATGCCAGCTGTGTGGGCTATACATTCACCTTTGATGGTAGCGCCCAATGTGCGCTTCAGCTTGACATTTTGTCGAACGGGTTGTGGTCGCCAGGGATGAAGATAGCTGCTTTTGTTAAGGTCGACAATTTGGAAACAGATCACTCAAATTTCAACGGAATGATGTACAAACTCCAAACCACATGTCCAGTTCATATCACCATACGGCCGCCGCCGGTGATTAAAGACAACACGACAAGAAACATATTGATAATCAGCACCATATTCATTGCCGAACTAATTTCCGGGGCGGTTTTCTTCTGTGCATTCTTGAAGAGATTTGTAAAATACAGAGACATGGCTCGCACGCTTGGTCTCGAATCACTTCCCGCCGGCGGGCCAAAGCAGTTCACTTACGCCGAGCTAAAGACGGCCACGAATGACTTCTCGACCTGCATCGGAAGAGGCGGATTCGGCGAAGTCTTCAAAGGAGAGCTACCGGACAAACGCGTGGTCGCCGTCAAGTGCTTGAAAAACGTCGCCGGTGGCGACCGTGACTTTTGGGCGGAGGTGACCATCATCGCTAGGATGCACCATCTGAATCTGCTTCGATTGTGGGGATTCTGCGCGGAAAAGGATAAAAAAATGTTAGTGTACGAACATATTCCCAATGGATCGCTCGACAAATTCCTCTTCACCAAACCTTTACCCTCCGATTCGGAGAAGAACGAAACAGAGTCGTCCGATGAAACCCCCTCGCTGGATTGGAACATCCGGCACCGAATCGCGATTGGGGTAGCGAGAGCAATCGCGTACTTGCACGAGGAATGCCTGGAATGGGTATTGCATCGTGACATAAAACCAGAGAACATCCTTCTGGACAACGATTTTTGCCCCAAATTGTCGGATTTCGGATTGTCTAAACTGAGGCAAAACGAGGAGACGAGGGTGAGCATGTCTCGGATTAGAGGGACGCCGGGTTACGTAGCGCCAGAGCTGGTGAAATTGGGATCGAATTGGATGACAACGAAAGCAGATGTGTACAGTTTTGGAATGGTGTTGTTGGAGATTATGAGTGGGCAGAGGAATTGTGAGATGAAAAGATCGACGGTGGAGAGTGCGGAGTGGTACTTCCCTGGATGGGCATTCGAGAAGGCGTTCGTGGAGGAGAGGATGGAGGAGATTTTAGACGATCGGATAAGGGATGAGTGGGAGAGTGGAGGGCATTGGGGGATTGTTAATCGTATGATGCAGACGGCGATGTGGTGTCTTCAAAGCCTACCGGAGAAGAGACCGTCGATGGGGGAGGTGGTGAAGATGTTGGAAGGGAAGCTTGAGATTGCTCCTCCTGAAAAGCCCTCTATTTACTTCTTGTCTGAACACCCTACCACTTCATGA 2421 49.57 MSFAATPLSILLLLFFFFFTSPLSPAAAQLPPKPTNFSAFSISQSPWRPTQNLILFSPNSLFAAGFRLLPKSSNLFVFSVWYFNISTDNVVWSANHLSPVNRSAALVITRTGQLHLDDGSGRNLWPSNSNVSANPNSTQLILRNDGDLIYGTWESFQFPTNTILPNQTLNGTTIVSNNGKYAFENSVNLTFGADRYWTSGNPFQIFLIGGQIIINNQTPIFPSDFNSTRLRKLVVDDDGNLKIFSFNPSLRRWDVVWQAHIELCEIFHTCGPNSICMSTGSYNSTYCVCAPGFIPDPRGGARQGCHRKLNISKTPKFLQLDFVSFRGGVKQISLQTPNISVCQANCLKNASCVGYTFTFDGSAQCALQLDILSNGLWSPGMKIAAFVKVDNLETDHSNFNGMMYKLQTTCPVHITIRPPPVIKDNTTRNILIISTIFIAELISGAVFFCAFLKRFVKYRDMARTLGLESLPAGGPKQFTYAELKTATNDFSTCIGRGGFGEVFKGELPDKRVVAVKCLKNVAGGDRDFWAEVTIIARMHHLNLLRLWGFCAEKDKKMLVYEHIPNGSLDKFLFTKPLPSDSEKNETESSDETPSLDWNIRHRIAIGVARAIAYLHEECLEWVLHRDIKPENILLDNDFCPKLSDFGLSKLRQNEETRVSMSRIRGTPGYVAPELVKLGSNWMTTKADVYSFGMVLLEIMSGQRNCEMKRSTVESAEWYFPGWAFEKAFVEERMEEILDDRIRDEWESGGHWGIVNRMMQTAMWCLQSLPEKRPSMGEVVKMLEGKLEIAPPEKPSIYFLSEHPTTS 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4567063 4569483 - Cp4.1LG13g06520.1 Cpe13g00425 479623

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00425 806 PANTHER OS10G0101000 PROTEIN 19 801 - -
Cpe13g00425 806 Pfam S-locus glycoprotein domain 226 295 IPR000858 GO:0048544
Cpe13g00425 806 Gene3D Transferase(Phosphotransferase) domain 1 563 790 - -
Cpe13g00425 806 ProSiteProfiles EGF-like domain profile. 260 296 IPR000742 -
Cpe13g00425 806 ProSitePatterns Protein kinases ATP-binding region signature. 494 516 IPR017441 GO:0005524
Cpe13g00425 806 ProSiteProfiles PAN/Apple domain profile. 305 396 IPR003609 -
Cpe13g00425 806 Gene3D Phosphorylase Kinase; domain 1 458 562 - -
Cpe13g00425 806 CDD STKc_IRAK 494 784 - -
Cpe13g00425 806 Gene3D - 47 158 IPR036426 -
Cpe13g00425 806 Pfam Protein kinase domain 493 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00425 806 Pfam D-mannose binding lectin 90 170 IPR001480 -
Cpe13g00425 806 PIRSF SRK 171 806 IPR024171 GO:0004674
Cpe13g00425 806 PIRSF SRK 3 201 IPR024171 GO:0004674
Cpe13g00425 806 SMART blect_4 51 159 IPR001480 -
Cpe13g00425 806 ProSiteProfiles Protein kinase domain profile. 488 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00425 806 SUPERFAMILY Protein kinase-like (PK-like) 471 783 IPR011009 -
Cpe13g00425 806 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Cpe13g00425 806 CDD B_lectin 55 159 IPR001480 -
Cpe13g00425 806 SMART serkin_6 488 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00425 806 ProSiteProfiles Bulb-type lectin domain profile. 46 163 IPR001480 -
Cpe13g00425 806 PANTHER OS07G0415500 PROTEIN 19 801 - -
Cpe13g00425 806 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 201 IPR036426 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00425 - - - csv:101221701 1333.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00425 Cpe-Chr13:4567063 Cpe13g00715 Cpe-Chr13:6620524 7.49E-110 dispersed
Cpe01g01854 Cpe-Chr1:15791799 Cpe13g00425 Cpe-Chr13:4567063 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g528 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0729 . . . Csa05g01971 . . . . . . . . . . . . Cmo15g00931 . Cma15g00892 . Car15g00838 Cpe13g00425 . Bhi12g00960 . . . . . Lcy10g1599 Cla01g00650 . . . . . . Lsi09g00703 . Chy09g00808 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003119 0 2 1 0 0 2 2 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62784 PF00069 Pkinase 8.30E-45 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00425 Cpe_Chr13 FPKM 30.651072 28.749901 23.914484 28.025478 8.292773 10.464452 11.026389 12.277688 12.164198 15.572661