Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00426 ATGGCTCTCCCTCCGGTTGAGTGTATATATGTTGTAGAAAGCAATCTTCGAGAATGGAAGTCCGGAAATTCGAGCTTTAGGGTTCCTCAACCTGTCCCTGTGCTTCGATTCCTTTACGAGCTCTGCTGGACCATGGTCCGAGGTGAATTGCCATTCCCCAAGTGTAAAGCAGCATTGGATTCAGTTGAGTTCTCGGATCAAATGTCTGCGGAGGAGTTAGGATCAACTTTTGCTGATGTCATTACCCAATTGGCCCAAGATATCACATTAGCAGGAGAGTATCGTGCTCGTCTCTTGAAATTGGCTAAGTGGCTTGTTGAATCAGCATTTGTCCCATTGCGGCTTTTTCAGGAGCGCTGTGAGGCTAAGTGGCTTGTTGAATCAGCATTTGTCCCATTGCGGCTTTTTCAGGAGCGCTGTGAGGAAGAATTTCTATGGGAGGCTGAAATGATAAAGATTAAGGCGCAAGAATTGAAAAATAAAGAGGTCCGAGTAAATACTCGTCTTCTATATCAGCAAACGAAGTTTAATCTTCTGCGGGAAGAAAGTGAGGGTTATGCCAAGTTGGTAACACTTCTTTGCCGGGTCACTGACGCTTCAAATAATAATTTTTCGGGATCAACAATTGGTATTATAAAGTCATTGATTGGGCATTTTGATCTGGACCCAAACCGTGTTTTTGACATTGTCTTGGAGTGTTTTGAACTTCAGCCAGAAAATAGTGTTTTCGTAGAGCTAATTCCAATATTTCCCAAGTATCATGCTTCACAAATCCTTGGGTTCAAATTTCAATATTATCAGCGTATTGAAGTAAATTCGCCAGTGCCATTTGGGCTTTATAAGCTTACAGCGTTACTAGTGAAGGAAAAATTTATTGTTCTTGATAGCATATATGCACATCTGCTCCCGAAAGAGGATGAGGCATTTGAACATTATGATTCCTTTTCTTCCAAAAGACTTGATGAGGCTAACAGAATAGGAAAAATAAATCTTGCGGCAACTGGAAAGGACCTAATGGATGACGAGAAGCAAGGAGATGTAAGCATCGATCTTTTTTCTGCCCTTGATATGGAAAGTGAGGCAGTCAATGAAAGGTCTCCAGAGCTGGAAAACAATCAAACATTGGGCTTGCTTACTGGATTTCTTTCTGTGGGTGACTGGTACGTATGTCATCTTGTCCTCTCTGTGAGACCGTCCATCGTGTCGTCGGACTCCCTTTGCCATGCCGTCACCTTTCTTTCTGGAGTTCCCATTTGCATTAGTTTTGGTTATTCACAGTCTTTCCGCTCGGTTCACTACCTTTTGATGGGGATTGGATTCTATTCGGTTATGGATTTACAAGAGCTGTTTTATGACTTGGAGCTGAATTTTCTAATTGGTAGTGGGACAGAGGAGATCTCTTCTGACAAAGCTATTGAAGGGGGTCTTTGCAATCTTTTTTCGGGAGGTAATTTACAGTTCTGCAAGTATCATGCACACATACTGTTTGATCGGCTTTCACCTCTCAATCCTGTGGAGCATCTTCCAATTTGTAACAGCTTGTTTAGGCTCATTGAAGAATCAATCTCCTCTGCATATTCTATTGTCCGTCAAAATCCTTATCAGAGCTTGGGGGCATCCTCTGGAACTAGTATTGATATTATAGGCACTACAAGTTTGCCGGTGGGTGGTACTTTTATAGATCTTCCAAGGGAACTATTCCAGATGCTTGCCGCTGCTGGACCTTATCTCTATCGTGATACAATTCTGCTACAGAAGGTTTGTAGAGTGCTTAGAGGTTGTTATATGTCGGCAATTGAGTTTGTCAACAGTATGGAAAGTGGTCTGAATCCTGAATTTGGTATCCTAGCTGGAAACCGGGCTCCTCACCTTCACTTAAAGGAAGCAAGGTTGAAGATTGAGGAAGCCCTAGGAACGTGCCTACTTCCTTCTTTACAGTTGATACCTGCCAATCCAGCTGTTGGTCAAGGAATATGGGAAGTAATGAATCTTCTTCCATATGAGGTGCGATATCGTTTATATGGTGAATGGGAGAAAGATGATGAGAAGATTCCAATGGTTTTGGCTGCAAGGCAGACGGCAAAGTTGGACACACGAAGGATTTTGAAGCGGTTGGCTAAAGAAAATTTGAAGCAATTGGGTAGGATGGTTGCAAAACTTGCTCATGCGAATCCAATGACTGTCCTTCGTACAATAGTACACCAGATTGAGGCATATAGGGATATGATTACTCCTGTAGTAGATGCATTCAAGTATCTGACTCAGCTTGAGTATGACATATTGGAATATGTTGTGATTGAACGCTTGGCACAAGGAGGGCGTGACAAGTTGAAGGATGATGGCCTTAATCTCTCAGATTGGCTCCAATCATTAGCTTCATTTTGGGGTCACCTGTGTAAGAAGTACCCATCTATGGAACTAAGGGGTTTGTTTCAGTATCTTGTCAATCAGTTAAAAAAAGGCCAAGGAATTGAGCTTGTTCTCCTGCAGGAGCTTGTTCAACAAATGGCTAATGTCCAATACACAGAAAACCTGACTGAGGAACAGTTGGATGCTATGGCAGGAAGTGAGACACTTCGTTTTCAGGCAACTTCTTTTGGAGTTACACGAAATAACAAGGCATTGATCAAGTCGAGCAACAGACTGCGTGACTCGTTGCTTCCCAAGGATGAACCAAAATTGGCAGTCCCCCTTTTGCTACTTATTGCTCAACACCGTTCAGTGGTTGTTATAAATGCAGATGCTCCTTATATAAAGATGGTCAGCGAGCAGTTTGATAGATGTCATGGAACTCTGCTTCAATATGTGGAATTTCTTAGTAGTGCAGTTACGCCAACATCTGCTTATGCTCAGTTGATTCCCTCACTCAATGAACTTGCCCATCTTTATCACCTAGATCCCGAGGTTGCTTTCCTGATATATCGGCCAATAATGAGACTATTCAAGTGTCAAGGTGGATCTGATATCTTCTGGCCACTGGATGGTAATGATGCAAATGTTGCTGGCAATAATTCTGATCTGGAACCTGCAGTATGTTCTGCTGATGTTGTTTTGGATCTTGGTTCTTCACAGAAACTTGTGAGGTGGTCAGATCTGCTCGATACTGTAAAGTCTATGTTGCCTCCAAAAGCTTGGAATAGCTTGTCTCCAGATCTCTTTACTACATTTTGGGGTCTCACCCTCTATGATCTTTATGTTCCTCGGAGTAGATATGAAACTGAAATTGCTAAGCAGCATTCTGCTCTTAAAGCTTTAGAAGAGCTTTCTGATAACTCAAGTTCTGCAATCAATAAAAGGAAGAAAGACAAAGAAAGAATTCAAGAATCTCTTGATCGCCTGTCCAATGAACTTGTTAAGCATGAAGAAAATGTTGCATCAGTTCGTAGACGACTTTCTCGTGAAAAGGATAAATGGTTGAGCTCCTGTCCTGATACTTTGAAAATTAACATGGAGTTCCTTCAGCGTTGTATTTTCCCCCGCTGTACATTCAGCATGCCTGACGCTGTCTACTGTGCTATGTTTGTGCACACTCTTCATTCCCTTGGAACACCATTTTTCAATACAGTCAACCATATTGATGTTTTGATATGTAAAACCTTGCAACCCATGATATGCTGCTGTACGGAATATGAAGCAGGCAGGCTTGGGAGGTTTTTATATGAGACACTAAAGATAGCTTATCATTGGAAGAGTGATGAATCCATTTATGAACGTGAATGTGGAAATATGCCTGGATTTGCTGTCTATTATAGGTATCCAAACAGCCAAAGAGTAACGTACGGCCAGTTCATCAAGGTTCATTGGAAGTGGAGCCAAAGAATTACACGGTTATTGATACAATGCTTGGAATCTACAGAGTACATGGAAATTAGAAATGCTCTTATAATGTTGACAAAAATATCCAATGTGTTTCCCGTCACTAGAAAGAGTGGGATCAACCTTGAGAAACGGGTTGCTAAGATCAAAAGTGATGAAAGAGAAGATCTGAAGGTGTTAGCGACTGGCGTTGCTGCAGCCTTGGCTGCTAGAAAGCCTTCATGGGTTACGGATGAAGAGTTTGGCATGGGTTACCTTGAATTAAAGACTGCACCATCACTTGCATCAAAGTCTTCGGCCAGTAATTTAGCTGCTAGCCAAAATAATTCCATTTATCCTTCCCAAAATGAACCTGGTGGAGGGAAGACTGCTGCATTAGCCATCCCAAATTCAGATTCTTTAAATATAGGCAAAGACCATTCATTGAGGTCAAGAAGTTCTGATGTGAGAATGGATAAAATAGATGGTTCTTCTGTTCCAAAATCTGAGATCGAGCATGGGAAAATGAAAGGCACATCATTGAACGGGCCAGATTCCCAGCCACTGGTGCCCTCAACGTCTGTACATTCAGGATCGTTAAGTCTGAAACCTGGTGATGATTTAAGTAGGACTTTGGATGAGGGCTCATCAAAAGCTATTTCAAAGACCACGTCTGAATCCGAGTTGAGAGTTTCAGCGAAACGATCAGCACCTGCTGGGTCTCTTAATAAAGCACCAAAACAAGATGTCACAAAAGATGAGATTAGAACAGGAAAAGCTGCTAGCAAGAACCCTGGGTCTTCCACAAGTGAAAGGGAGCTTCCAAGTCATTCAACAGACGGTGGTAGGCATGGAGGTTCTTCCAATGTACCTTCTTCAGTTATGCCAAACGGTAATACACAAGGTTCGTTAACTAAAGGCTCGTCCTTATCAGTAAAAGCTTTAGATGGTCATACTATTGAATCAAAGGCAGAGAGTGGGGTTGGGAGGACTTCCGATAGTAGGGCTTCATCAGCAAAGGATGATGGCACTGAAGCTCTTGAAGTTGCAAGGTCCTCTTCTTCCAGACTTGCTCATTCTCCCAGGCATGATAATTCGACCAGTGGTTCTAGATCTAGTGATAAGCTGCAGAAAAGAGCTAGTCCTGCAGAAGAACCCGACAGACAAGGTAAACGCCGGAAAGGAGATGGTGAAACTAGAGATGTAGATGGGGATTTTTGTATCTCTGACAAGGATAGATCTATGGATCCACGTTCTGTAGATGCTGATAAACTAGGAACGGATGAACAAGGTGGTTACAGAGGTTCAGACAAGCCTTTGGATCGGACAAAAGATAAAGTAAATGAAAGGTATGATAGGGAATACAGAGACCGGGTAGAGCGCCCTGAAAAGTCCCGTGGAGATGATCCATCAGTAGAAAGAACAAGAGATAGATCAATAGAAAGATATGGAAGAGAACGCTCGGTTGAAAAAGTGGAGAGAGTTTCTGATAGGTATCCTGAAAAGTCTAAGGATGAAAGAAATAAAGATGATAGGAGCAAATTACGATATACTGACTCAAGTATAGAGAAGTCTCATGTTGATGATCGGTTCCACGGACAGAGCTTGCCACCTCCGCCGCCCTTGCCTCTACACATGGTCCCTCAATCTGTTAATAGTGGGAGAAGAGAAGAAGATGCCGATAGGAGGTTTGGAACTACTAGACACACTCGAAGGCTTTCTCCTAGACACGAAGAGAAGGAACGAAGACGATCAGAGGAAAATTTAATTTCACAGGATGATGCAAAACGCAGAAGAGAAGAGGAATTTCGAGAAAGAAAGAGAGAAGAGAGAGAGTTGGGGATGTCATTGAAGGCTGATGACAGGGATAGGGAGAGGGAGAGGGAAAAGGCAAACCTTTTGAAGGAGGACATGGACGGTTCTGCCACCTCCAAGAGGCGAAAACTTAAAAGGGAGCATCTGTCATTAGCTGAGGCCGGTGAGTATTCTCCTGTTGGCCCACCACCTCCTCCGATAGGTGTTGGTGCGTCTCAATCTTATGATGGACGAGAAAGAGGAGACCGGAAGGGAGTAATGATGCAGCGTGCCGGTTACCTGGATGACCCAGGCTTGAGAATTCACGGTAAAGAAGTGGTCAACAAGATGACTAGACGTGAAGCTGATCTAATGTACGACCGAGAATGGGACGATGAGAAAAGAATGAGAGCAGATCAGAAGCGGAGGCATCGGAAATAA 6030 42.92 MALPPVECIYVVESNLREWKSGNSSFRVPQPVPVLRFLYELCWTMVRGELPFPKCKAALDSVEFSDQMSAEELGSTFADVITQLAQDITLAGEYRARLLKLAKWLVESAFVPLRLFQERCEAKWLVESAFVPLRLFQERCEEEFLWEAEMIKIKAQELKNKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRVTDASNNNFSGSTIGIIKSLIGHFDLDPNRVFDIVLECFELQPENSVFVELIPIFPKYHASQILGFKFQYYQRIEVNSPVPFGLYKLTALLVKEKFIVLDSIYAHLLPKEDEAFEHYDSFSSKRLDEANRIGKINLAATGKDLMDDEKQGDVSIDLFSALDMESEAVNERSPELENNQTLGLLTGFLSVGDWYVCHLVLSVRPSIVSSDSLCHAVTFLSGVPICISFGYSQSFRSVHYLLMGIGFYSVMDLQELFYDLELNFLIGSGTEEISSDKAIEGGLCNLFSGGNLQFCKYHAHILFDRLSPLNPVEHLPICNSLFRLIEESISSAYSIVRQNPYQSLGASSGTSIDIIGTTSLPVGGTFIDLPRELFQMLAAAGPYLYRDTILLQKVCRVLRGCYMSAIEFVNSMESGLNPEFGILAGNRAPHLHLKEARLKIEEALGTCLLPSLQLIPANPAVGQGIWEVMNLLPYEVRYRLYGEWEKDDEKIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQGGRDKLKDDGLNLSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELVQQMANVQYTENLTEEQLDAMAGSETLRFQATSFGVTRNNKALIKSSNRLRDSLLPKDEPKLAVPLLLLIAQHRSVVVINADAPYIKMVSEQFDRCHGTLLQYVEFLSSAVTPTSAYAQLIPSLNELAHLYHLDPEVAFLIYRPIMRLFKCQGGSDIFWPLDGNDANVAGNNSDLEPAVCSADVVLDLGSSQKLVRWSDLLDTVKSMLPPKAWNSLSPDLFTTFWGLTLYDLYVPRSRYETEIAKQHSALKALEELSDNSSSAINKRKKDKERIQESLDRLSNELVKHEENVASVRRRLSREKDKWLSSCPDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEYEAGRLGRFLYETLKIAYHWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIKVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISNVFPVTRKSGINLEKRVAKIKSDEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKTAPSLASKSSASNLAASQNNSIYPSQNEPGGGKTAALAIPNSDSLNIGKDHSLRSRSSDVRMDKIDGSSVPKSEIEHGKMKGTSLNGPDSQPLVPSTSVHSGSLSLKPGDDLSRTLDEGSSKAISKTTSESELRVSAKRSAPAGSLNKAPKQDVTKDEIRTGKAASKNPGSSTSERELPSHSTDGGRHGGSSNVPSSVMPNGNTQGSLTKGSSLSVKALDGHTIESKAESGVGRTSDSRASSAKDDGTEALEVARSSSSRLAHSPRHDNSTSGSRSSDKLQKRASPAEEPDRQGKRRKGDGETRDVDGDFCISDKDRSMDPRSVDADKLGTDEQGGYRGSDKPLDRTKDKVNERYDREYRDRVERPEKSRGDDPSVERTRDRSIERYGRERSVEKVERVSDRYPEKSKDERNKDDRSKLRYTDSSIEKSHVDDRFHGQSLPPPPPLPLHMVPQSVNSGRREEDADRRFGTTRHTRRLSPRHEEKERRRSEENLISQDDAKRRREEEFRERKREERELGMSLKADDRDREREREKANLLKEDMDGSATSKRRKLKREHLSLAEAGEYSPVGPPPPPIGVGASQSYDGRERGDRKGVMMQRAGYLDDPGLRIHGKEVVNKMTRREADLMYDREWDDEKRMRADQKRRHRK 2009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4572387 4610611 - Cp4.1LG13g06540.1 Cpe13g00426 479624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00426 2009 MobiDBLite consensus disorder prediction 1410 1440 - -
Cpe13g00426 2009 Pfam Transcription factor/nuclear export subunit protein 2 1045 1339 IPR021418 -
Cpe13g00426 2009 PANTHER THO2 PROTEIN 12 122 IPR040007 GO:0000347|GO:0006397|GO:0006406
Cpe13g00426 2009 Pfam THO complex subunit 2 N-terminus 66 404 IPR032302 -
Cpe13g00426 2009 Pfam THO complex subunit 2 N-terminus 552 715 IPR032302 -
Cpe13g00426 2009 MobiDBLite consensus disorder prediction 1380 1953 - -
Cpe13g00426 2009 Pfam Transcription- and export-related complex subunit 717 792 IPR021726 -
Cpe13g00426 2009 PANTHER THO2 PROTEIN 122 1916 IPR040007 GO:0000347|GO:0006397|GO:0006406
Cpe13g00426 2009 PANTHER THO COMPLEX SUBUNIT 2 12 122 - -
Cpe13g00426 2009 PANTHER THO COMPLEX SUBUNIT 2 122 1916 - -
Cpe13g00426 2009 Coils Coil 1096 1137 - -
Cpe13g00426 2009 Coils Coil 1857 1877 - -
Cpe13g00426 2009 MobiDBLite consensus disorder prediction 1642 1796 - -
Cpe13g00426 2009 MobiDBLite consensus disorder prediction 1983 2001 - -
Cpe13g00426 2009 MobiDBLite consensus disorder prediction 1445 1465 - -
Cpe13g00426 2009 MobiDBLite consensus disorder prediction 1613 1641 - -
Cpe13g00426 2009 MobiDBLite consensus disorder prediction 1817 1922 - -
Cpe13g00426 2009 Coils Coil 1068 1088 - -
Cpe13g00426 2009 MobiDBLite consensus disorder prediction 1479 1496 - -
Cpe13g00426 2009 MobiDBLite consensus disorder prediction 1526 1577 - -
Cpe13g00426 2009 MobiDBLite consensus disorder prediction 1983 2009 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00426 K12879 THOC2; THO complex subunit 2 - csv:101221461 2675.2
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01856 Cpe13g00426 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01856 Cpe-Chr1:15804509 Cpe13g00426 Cpe-Chr13:4572387 7.78E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g529 . Blo16g00765 . Bda11g00196 Bpe13g00998 . . . . . . . . . . . Cpe01g01856 . . . . . . . . . . . . . . . . . . . Csa05g01969 . . . . . Bda11g00196 . . . Bma06g01140 . Cmo04g02231 Cmo15g00928 Cma04g02138 Cma15g00890 Car04g02075 Car15g00836 Cpe13g00426 . Bhi12g00962 . . . . . Lcy10g1597 Cla01g00652 Cam01g0681 Cec01g0674 Cco01g0701 Clacu01g0669 Cmu01g0642 Cre09g1863 Lsi09g00705 . Chy09g00805 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005299 1 1 2 1 1 1 2 1 1 1 1 1 3 1 1 3 1 2 2 1 2 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00426 Cpe_Chr13 FPKM 8.724411 8.235403 6.102738 7.489062 23.429592 21.443974 23.98414 7.128853 7.176749 7.125257