Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00428 ATGAGGGAACCCCATTTGGGGTTTGGGGTTTTCCTTTTGGTTTTTGTCTTGTTTCTGCTGTTTTTGGATTTCTCTGTTTACGCTCAGCCGGCTGGTGCGGGTGGTGATGATGGGTCAGTGATGAATCTTTTGAAGACTAGTATTGGAGCCACGGATTCTCTTGGATGGACTGGTTCGAATTACTGTGAATGGAAGCACGTTAAATGTGATTCTCAGAACCGAGTGGTTAAAATTCAAATTGGGAACCAAAATCTCAAGGGATCACTTCCCTCGGATCTCTTTAGCCTCTCGGCGTTAGTGCAATTAGAGGTACAGAGCAATCAGCTGACTGGGCCGTTTCCTAATCTCGCTGATTCACTCCAGATACTTCTAGCGCATGATAATCTGTTTACATCCATGCCGGCTGATTTCTTCGCCAAGAAGTCGGCTCTGCAGACGATAGATGTCGACAACAATCCCTTCATGGCGTGGCAAATTCCTGATAGCATTCGAGATGCTTCTGGTCTTCAGGAATTATCGGCCAATCGCGCTAATGTAACTGGTAACACCCTTCAAATTTTCGATGGCACGACGTTTCCGACTCTTAGGAACTTGCATTTGGCAGGTAATTTTCTTGAAGGTGGATTACCAGTAAGCTTTGCGGGTTCTTCGATTCAGTCGCTTTGGTTGAATGGACAACAGAGTAACTCTAAGTTAAACGGTTCTATCGCCGTATTGCAAAACATGACTAATCTGCAGGAGGTTTGGTTGCATATGAACCACTTTTCAGGTCCTTTGCCCGATTTCTCTAACCTTCAGGGGTTAGAGACCTTGAATTTGAGGGATAATCAGCTTACGGGTATTGTTCCTTCGTCCTTGATAAACTTGAAATCCCTCACAGTTGTGAATTTGACGAATAATCTGCTTCAAGGACCCACCCCTGCGTTTAATCCTAATGTAAAGCTGGATATGAGACCAGGATCCAACAATTTTTGCACGGATTCTCCGGGTGAGCCTTGTGATCCCCGAGTGAGTGCTCTGTTATCGGTTGCACAATCAATGGGGTTTCCAACAGTCTTTGCCCAAAGCTGGGTAGGGAACAATCCTTGTGAGGATTTCAAAGGTGTTGCATGTACTGGCAACCCCGAAAATATAACCATAATCAACTTTAAGAATATGGGTCTTGCGGGCTCTATTTCTCCTAGCTTTTCATTGCTTACATCTGTACAGAAGTTGATTCTCTCTAACAATTATCTTTCTGGCACAATACCAACCGAACTTGTGACTATGCCCAGTCTTATAGAATTAGATGTCTCCAGTAATAGGCTTCATGGGAAAGTGCCCGCCTTCAGGAAAAATGTGATTGTGAACACACAGGGGAACCCGGATATTGGGAAAGATCGGCCCAGTTCTCCCGCACCAGGCTCTCCCGAAAAGGGAGCGCCCTCCGATTATGGAACAGGCGACGATCCTGATGGGGGTGTTAAGAAAAGTAATACTGGAGTGGTTGTTGGTTCTATAATTGGTGTTATTGTTGGTCTCCTTTTAGTTGGGACTGCGATTTTCTTTTGGTACAAGAGAAAGAAGAGACATGGTAGTATAGTACAGAACCCAAATACAGTAGTGGTACATCCTAGTCATTCTGGGGATCAAAATTCAGTGAAGATTACAGTTACGGAGACGAGGGCCGATGGGAGTACTCCTGAATCCAGCGGAGTTCCTATTGCTGGACCGAGTGATGTCCCCAGGGGTGTTGAGTATTTGCATAGTTTAGCACATCAAAGCTTTATCCATCGCGATCTTAAACCATCAAACATTCTTCTTGGAGATGATTTGCGGGCTAAAGTAGCAGACTTTGGGTTGGTTCGTCTTGCTCCTGAAGGGAAAGCGTCGGTCGAAACAAGACTCGCAGGAACGTTTGGTTATCTTGCCCCAGAATATGCTGACGAGGAGACCCTTGGCAGCATCTGCACGGTTGCGGACTTGGCTGGCCACTGCTGTGCAAGGGAGCCATACCAGCGACCCGACATGAGTCATGCAGTCAACGTTCTTTCGTCTCTAGTCGATGTGTGGAAACCAACAGAACCAGACTTGGAAGACACATTGGGAATCGATCTCGATATGTCGTTACCACAGGCGCTTAAGAGATGGCAGGCATTTGAAGGAAATAGCAATTTGGACATGACATCGTCTTCATCATCGTTGCTTGCGAGTGGAGACAATACACAAAGCAGCATCCCAAACCGACCACCTGGTTTCGCGAATTCGTTTACCTCTCTCGACGCACGGTGA 2271 46.15 MREPHLGFGVFLLVFVLFLLFLDFSVYAQPAGAGGDDGSVMNLLKTSIGATDSLGWTGSNYCEWKHVKCDSQNRVVKIQIGNQNLKGSLPSDLFSLSALVQLEVQSNQLTGPFPNLADSLQILLAHDNLFTSMPADFFAKKSALQTIDVDNNPFMAWQIPDSIRDASGLQELSANRANVTGNTLQIFDGTTFPTLRNLHLAGNFLEGGLPVSFAGSSIQSLWLNGQQSNSKLNGSIAVLQNMTNLQEVWLHMNHFSGPLPDFSNLQGLETLNLRDNQLTGIVPSSLINLKSLTVVNLTNNLLQGPTPAFNPNVKLDMRPGSNNFCTDSPGEPCDPRVSALLSVAQSMGFPTVFAQSWVGNNPCEDFKGVACTGNPENITIINFKNMGLAGSISPSFSLLTSVQKLILSNNYLSGTIPTELVTMPSLIELDVSSNRLHGKVPAFRKNVIVNTQGNPDIGKDRPSSPAPGSPEKGAPSDYGTGDDPDGGVKKSNTGVVVGSIIGVIVGLLLVGTAIFFWYKRKKRHGSIVQNPNTVVVHPSHSGDQNSVKITVTETRADGSTPESSGVPIAGPSDVPRGVEYLHSLAHQSFIHRDLKPSNILLGDDLRAKVADFGLVRLAPEGKASVETRLAGTFGYLAPEYADEETLGSICTVADLAGHCCAREPYQRPDMSHAVNVLSSLVDVWKPTEPDLEDTLGIDLDMSLPQALKRWQAFEGNSNLDMTSSSSSLLASGDNTQSSIPNRPPGFANSFTSLDAR 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4612613 4615670 - Cp4.1LG13g06560.1 Cpe13g00428 479626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00428 756 Pfam Protein kinase domain 574 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00428 756 ProSiteProfiles Protein kinase domain profile. 378 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00428 756 PANTHER OSJNBA0070M12.3 PROTEIN 15 557 - -
Cpe13g00428 756 PANTHER OSJNBA0070M12.3 PROTEIN 642 756 - -
Cpe13g00428 756 PANTHER RECEPTOR PROTEIN KINASE TMK1 572 641 - -
Cpe13g00428 756 Gene3D Ribonuclease Inhibitor 335 461 IPR032675 -
Cpe13g00428 756 Pfam Leucine rich repeat N-terminal domain 337 371 IPR013210 -
Cpe13g00428 756 Pfam Leucine rich repeat N-terminal domain 36 70 IPR013210 -
Cpe13g00428 756 MobiDBLite consensus disorder prediction 451 487 - -
Cpe13g00428 756 PANTHER RECEPTOR PROTEIN KINASE TMK1 15 557 - -
Cpe13g00428 756 PANTHER RECEPTOR PROTEIN KINASE TMK1 642 756 - -
Cpe13g00428 756 PANTHER OSJNBA0070M12.3 PROTEIN 572 641 - -
Cpe13g00428 756 Pfam Leucine Rich Repeat 268 289 IPR001611 GO:0005515
Cpe13g00428 756 SUPERFAMILY Protein kinase-like (PK-like) 573 689 IPR011009 -
Cpe13g00428 756 MobiDBLite consensus disorder prediction 723 756 - -
Cpe13g00428 756 Gene3D Transferase(Phosphotransferase) domain 1 554 695 - -
Cpe13g00428 756 SUPERFAMILY L domain-like 50 455 - -
Cpe13g00428 756 SMART serkin_6 491 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00428 756 Gene3D Ribonuclease Inhibitor 36 332 IPR032675 -
Cpe13g00428 756 ProSitePatterns Serine/Threonine protein kinases active-site signature. 589 601 IPR008271 GO:0004672|GO:0006468
Cpe13g00428 756 TIGRFAM LPXTG_anchor: LPXTG cell wall anchor domain 492 523 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00428 - - - csv:101210025 896.345
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01857 Cpe13g00428 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00428 Cpe-Chr13:4612613 Cpe13g00546 Cpe-Chr13:5506394 0 dispersed
Cpe01g01857 Cpe-Chr1:15842895 Cpe13g00428 Cpe-Chr13:4612613 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g532 . . Bda01g01787 Bda11g00197 Bpe13g00997 . . . . Cmo18g00627 . . . . . . Cpe01g01857 . . . . . . . . . . . . . . . . . . . Csa05g01967 . . . . . Bda11g00197 . Bpe02g01964 Bma01g00495 Bma06g01141 . Cmo04g02234 Cmo15g00927 Cma04g02141 Cma15g00889 Car04g02076 Car15g00835 Cpe13g00428 . Bhi12g00963 . . . . . Lcy10g1596 Cla01g00653 . . . . . . Lsi09g00707 . Chy09g00467 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001831 2 2 1 2 3 1 4 1 1 2 2 1 4 2 1 4 1 1 4 1 2 2 2 2 2 2 2 3 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62785 PF00069 Pkinase 6.30E-15 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00428 Cpe_Chr13 FPKM 1.173058 1.020492 0.181312 0.0 1.768887 2.176859 1.877606 0.0 0.0 0.0