Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00429 ATGGGAACAACAAAGAAGGGTTACACGTTTGTTCAAGCTAACAGGGCTTGGCTTAGAAAGTATCTTCTGTTCTGGATTATGGGGATGGCGTTTATCAGCATGTTAATCTATAATGGCATGGATGCTGATATCAAGGTGAGGAGGAATGAAGTGTTGGGGAGTATGTGTGAGCAGAGGGCAAGGATGTTGCAGGATCAATTCAATGTTAGTGTTAACCATGTTCATGCCTTGGCTGTCCTTGTTTCCACCTTTCATTACTTCAAAAACCCTTCTGCTATTGATCAGGAAACTTTTGCAGAATACACAGCCAGAACTGCTTTTGAACGGCCTCTACTCAGTGGGGTGGCGTATGCACAAAGAGTGATTCATTCGGAGAGGGATATCTTCGAAAAGCAACACGGGTGGATGATAAGAACAATGGAAAAGGAACCTTCGCCCATTCGAGATGAATATGCACCAGTAATATTTTCTCAAGAAACAGTCTCGTATATTGAATCGTTGGATATGATGTCAGGAGAGGAGGACCGGGAAAATATTTTGAGGGCTAGAGCAACAGGAAAGGCTGTCTTAACAAGACCCTTCAGGCTGCTGGGTTCCCATCATCTTGGAGTTGTTTTGACATTTCCTGTTTACAAATCCAAATTGCCATCCATACCGACTGAAGAAGAACGGATAGAAGCAACAGCAGGCTACGTTGGCGGAGCCTTTGATGTTGAGTCACTCGTGGAGAACTTGCTTGGGCAGCTTGCAGGGAATCAGGCCATTTTGGTAAATGTATATGATGTCACGAACTCTTCTGATCTTCTCGTGATGTATGGTCATCAATATCAAGATGGTGACTTGTCGCTTTCGCACGAGAGCAGCCTTGATTTCGGAGATCCATTCAGGAAGCATTTGATGATTTGTAGATATCAGCAGAGGGCTCCCACATCCTGGACTGCCCTAACTACTGCATTCTTATTCTTCGTGATCGGTTTGTTAGTTGGATATATTTTGTATGGTGCAGCAACTCACATTGTGAAGGTTGAAGATGATTTTCATGAAATGCAAGTACTGAAAGTTCGAGCGGAGGCTGCGGATGTAGCAAAATCCCAGTTTCTTGCAACTGTTTCTCATGAAATTAGGACACCAATGAATGGCATCCTCGGAATGCTTGCTCTGCTTCTGGATACAGATTTAAGCTCCACACAGAAGGATTATGCTCAAACTGCCCAGGCTTGTGGAAAGGCACTGATAGCATTAATAAATGAGGTTCTCGACCGGGCAAAAATTGAAGCTGGAAAGTTAGAACTGGAAGCAGTTCCATTCGACATTCGATCAATACTTGATGACGTGCTATCTTTATTTTCCGAGAAGTCCAGACAAAAGGGTCTGGAGCTGGCAGTTTTTGTTTCTGATAAAGTTCCAGAAATTGTAATTGGAGATCCTGGAAGATTCAGACAAATTATAACAAATCTTGTGGGTAACTCTGTTAAGTTTACTGAAAGGGGACATATATTTGTTAAAGTACACCTAGCTGAGAATTCAAAAGTCTCCATGGACTCGGAATATGTCAACGGAATATCTGACAGTGGCTTATTCGTATTGGATGGTCGTGAATTTCAAACTTTGAGTGGACGCGAGGCAGCCGATGATCAGAACAGTTGGGATAACTTCAAACATCTAATCGCTGACGACAACTTCCAGTCGAATGCCGCTCCAAACAACACAGCAGTTACCAACAAGGGTTGTGATCATGTTACTTTGATGGTAAGTGTGGAGGATACTGGAATTGGGATCCTTTTACATGCCCAAAATCGAGTTTTCACGCCCTTCATGCAAGCAGATAGCTCGACCTCCCGAAATTATGGAGGGACTGGTATTGGTTTGAGTATCAGCAAATGTTTAGTTGAGTTAATGGGTGGTCAGATCAACTTCATAAGCCGGCCTCAGATTGGAAGCACGTTTTCCTTCACTGCTGTATTTGGAAAATGTAAGAAAAACTCAATGAATGATATGAAAAAGCCCAACTCTGAAGAACTTCCCCCCAGTTTTAGAGGAATGAAAGCAATAGTAGTTGATAGCAAACATGTTAGAGCTTCTGTAACTAGATATCATTTGAAGAGACTTGGTATCATAGTTGAAGTCACCAATAGCATCAACATGGCAGCTTCTTTATTCAGAGAAAATGGATCCACACTACCAGGAAACACAATCCTTCCAGATATGATCTTAGTTGAAAAGGACATACTAAATTCTGATGAGGAATGTGGGATCATTCATCAACTGAACTGGAAACCGAACGGTAGTTCGGTAAAGTTTCCAAAGCTGATCCTTCTCGCTACCAATATTGCCACTGCTGAACTAGACAAGGCAAGAGCAGCAGGTTTTGCAGATACCGTGATCATGAAGCCGTTGAGGGCGACTATGGTGGCTGCCTGTCTTCAACAAGTACTCGGGGTTAAGAATCAGAGACGGCCGAATGGTTCTGCTTTCCTCCAGAGCCTTCTCTGTGGCAAGAGAATCTTAATTGTTGATGACAACCGAGTAAACCGTCGGGTCGCTGCAGGCGCTCTGAAGAAATTTGGTGCAGATGTTGAGTGTGCAGATAGCGGGAAATCTGCCCTGAAGTTGCTTCAGCTACCGCATAATTTTGATGCTTGCTTCATGGATATTCAAATGCCTGAAATGGATGGGTTTGAGGCGACTCGTCGTATCAGGACGATGGAGGTCGAGGCAAACAAAGGAGGATTGACTGCAACAGAAGGCAAACGGCCTATACCAATATTAGCAATGACTGCAGACGTGATTCATGCTACGTACGAAGAATGCCTGAAATGCGGTATGAATGGCTACGTCTCGAAACCGTTTGAAGAAGAAAATCTATACAAGGAAGTTGCCAGATTTTTCAAAAAACCATAG 2901 43.3 MGTTKKGYTFVQANRAWLRKYLLFWIMGMAFISMLIYNGMDADIKVRRNEVLGSMCEQRARMLQDQFNVSVNHVHALAVLVSTFHYFKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVIHSERDIFEKQHGWMIRTMEKEPSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPSIPTEEERIEATAGYVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDLLVMYGHQYQDGDLSLSHESSLDFGDPFRKHLMICRYQQRAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQVLKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAENSKVSMDSEYVNGISDSGLFVLDGREFQTLSGREAADDQNSWDNFKHLIADDNFQSNAAPNNTAVTNKGCDHVTLMVSVEDTGIGILLHAQNRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFSFTAVFGKCKKNSMNDMKKPNSEELPPSFRGMKAIVVDSKHVRASVTRYHLKRLGIIVEVTNSINMAASLFRENGSTLPGNTILPDMILVEKDILNSDEECGIIHQLNWKPNGSSVKFPKLILLATNIATAELDKARAAGFADTVIMKPLRATMVAACLQQVLGVKNQRRPNGSAFLQSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKSALKLLQLPHNFDACFMDIQMPEMDGFEATRRIRTMEVEANKGGLTATEGKRPIPILAMTADVIHATYEECLKCGMNGYVSKPFEEENLYKEVARFFKKP 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4620451 4627573 - Cp4.1LG13g06550.1 Cpe13g00429 479627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00429 966 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 416 652 IPR036890 -
Cpe13g00429 966 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 474 654 IPR003594 -
Cpe13g00429 966 Gene3D - 335 425 - -
Cpe13g00429 966 ProSiteProfiles Response regulatory domain profile. 834 963 IPR001789 GO:0000160
Cpe13g00429 966 SUPERFAMILY CheY-like 677 814 IPR011006 -
Cpe13g00429 966 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 349 428 IPR036097 GO:0000155|GO:0007165
Cpe13g00429 966 SMART CHASE_2 89 274 IPR006189 -
Cpe13g00429 966 Pfam His Kinase A (phospho-acceptor) domain 362 427 IPR003661 GO:0000155|GO:0007165
Cpe13g00429 966 SMART HisKA_10 362 427 IPR003661 GO:0000155|GO:0007165
Cpe13g00429 966 Gene3D - 426 659 IPR036890 -
Cpe13g00429 966 ProSiteProfiles Histidine kinase domain profile. 369 657 IPR005467 -
Cpe13g00429 966 PANTHER HISTIDINE KINASE 4 8 965 - -
Cpe13g00429 966 Coils Coil 412 432 - -
Cpe13g00429 966 CDD HisKA 362 423 IPR003661 GO:0000155|GO:0007165
Cpe13g00429 966 SUPERFAMILY CheY-like 832 963 IPR011006 -
Cpe13g00429 966 SMART HKATPase_4 474 657 IPR003594 -
Cpe13g00429 966 PRINTS Bacterial sensor protein C-terminal signature 582 596 IPR004358 GO:0016310|GO:0016772
Cpe13g00429 966 PRINTS Bacterial sensor protein C-terminal signature 641 654 IPR004358 GO:0016310|GO:0016772
Cpe13g00429 966 PRINTS Bacterial sensor protein C-terminal signature 617 635 IPR004358 GO:0016310|GO:0016772
Cpe13g00429 966 PRINTS Bacterial sensor protein C-terminal signature 600 610 IPR004358 GO:0016310|GO:0016772
Cpe13g00429 966 Pfam Response regulator receiver domain 835 959 IPR001789 GO:0000160
Cpe13g00429 966 Gene3D - 828 965 - -
Cpe13g00429 966 Gene3D CHASE domain 93 308 IPR042240 -
Cpe13g00429 966 ProSiteProfiles Response regulatory domain profile. 682 812 IPR001789 GO:0000160
Cpe13g00429 966 Pfam CHASE domain 92 272 IPR006189 -
Cpe13g00429 966 SMART REC_2 833 959 IPR001789 GO:0000160
Cpe13g00429 966 ProSiteProfiles CHASE domain profile. 89 301 IPR006189 -
Cpe13g00429 966 CDD REC_hyHK_CKI1_RcsC-like 835 959 - -
Cpe13g00429 966 PANTHER TWO-COMPONENT HISTIDINE KINASE 8 965 - -
Cpe13g00429 966 CDD HATPase_EvgS-ArcB-TorS-like 479 655 - -
Cpe13g00429 966 Gene3D - 40 92 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01858 Cpe13g00429 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00013 Cpe-Chr1:77826 Cpe13g00429 Cpe-Chr13:4620451 0 dispersed
Cpe02g00308 Cpe-Chr2:1621064 Cpe13g00429 Cpe-Chr13:4620451 1.07E-53 dispersed
Cpe04g00676 Cpe-Chr4:6801950 Cpe13g00429 Cpe-Chr13:4620451 0 dispersed
Cpe12g00916 Cpe-Chr12:7910725 Cpe13g00429 Cpe-Chr13:4620451 6.85E-34 dispersed
Cpe13g00429 Cpe-Chr13:4620451 Cpe16g00390 Cpe-Chr16:5476764 0 dispersed
Cpe20g00493 Cpe-Chr20:2847129 Cpe13g00429 Cpe-Chr13:4620451 5.62E-06 dispersed
Cpe01g01858 Cpe-Chr1:15849312 Cpe13g00429 Cpe-Chr13:4620451 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50403 PF02518 HATPase_c 2.30E-31 CL0025 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00429 K14489 - csv:101209777 1743.4