Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00430 ATGTTCGACGGCAAGGATCTCGCCTCCGATGGCGAGAACTCTCGGACCAAGGGTATTGGTTCTCGGGAGGACTCGAAATTTGCCGGAATCGGGCATTCGGGCTCTCAAGAACTCACTCTTAGCTACCTTTGTGAGAATTCGAAACTGGGTTCTCCTGGTTTTGCGGCTTCCTTCGACAAAGGTAATTACAAAGGTAAAGAAGTTTTGTTTTCTGAGAATTGTAACGATGATGATAAATGGGTTGAGAGGGATTTCTTGAATTTGAACTCGAATAGGGGAAATCAGTCTAAGCGGGAGGTTGAGGAGGAGATTGATAGGGGGGAGAATCGGGGAAAGAAGCCCAAACTTGAAACTCTTAATCTTTCTTTAGCTTTGCCTGAAGTTTCACTCTCTCTTACTGCTTCGAATGCCTTGCAAAATGAAGATCCTCCCCCTGTTCCGTCCAAGCCCTGTAGGAGCCTCCAATCTTTGGCCCCTTCAATGAACAACACCCAAACTACCTGTTCTAACGATTTCACCGCTGCTTCGCTTTCCTATTCCTACTCCCACCAGTTTTCTCACAACCCCAGTTGCTCTTTGACCCGAAATTCGACTGAGAATTTCGAGTATTCTGTTGGGAGAGACGACCATATTTGGAACTGTGGAGAGGGAACTAATGGGTCTGTTCATAGCAGGTTCAAACCACTAGGGGATGGAGTTGCCTTGTCAAATCATGGAGGTGGGCTTAATTCTTTGTCGCAGGGGAATCGCCCTTCCAATAAGGAGGCATGTAATACCTCCAATGATCACTCGTTTTTTCCGTCTGAGCTTCTGGCACGACCGAGAATGGAGGTGAAGTCGGGGAATTCAATTGGAAGGAGATCCGAAAATTTGGAGAGGGTAGAGGGTAGTTCTAGGCCGGAGAGAATTCTTCGTGAAGTCGTGTCGGAGTCTATCTCAGTCATGTCTCAAATAGTTCAGGAGCTTCCTGATGAAACACTTGCATCAGTCAAAGATTACTTGAAAGATGTAATTGCTATGCCTGATAAGAGAGACGAGTTATCATCTCTCCAAAAGCGTCTAGAGCGGCGATCCGATCTCAATAAGGAAGCTCTCTCAAAGTGTCACAAAGCACAGCTTGAGATTCTAGTTGCAGTGAAGATGGGGCTTGTGAGTTTCATCTCTGGGAAAAGCAGGTGCTCCATTGCAGAGCTTGTGGACATTTTATTGTTTCTGAAATGCAGGAACTGCAAGAGTGTAATCCCGGTTGATGATTGTGACTGCAAAATCTGCTCAGCCAACAAAGGATTTTGCAGCTCATGTATGTGTCCCATCTGTTTGAACTTCGATTGTGCAAACAATACTTGTAGTTGGGTTGGCTGTGATGTCTGCTCCCATTGGTGCCATGCTGCTTGTGGGATTGAGAAGAATCTCATCAGGCCTGGTCCGAGCCTGAAAGGTCCATCGGGGACGACCGAGATGCAGTTCCATTGCATTGCTTGTAATCATGCTTCAGAGATGTTTGGATTTGTGAAGGATGTTTTTGTGTACTGTGCTAAGAATTGGGGTGTAGAAACCTTGATGAAGGAGCTTGAGTGTGTGAAGAGGATCTTCATTGGAAGTGATGACTACAAAGGCAAGGATTTGTATATTAAAGCAGCTCAGATTCTTGCCAAGCTTGAAAGGAAAGCACTTGCTCCTTGGGAGGCCTGCAATATCATTCTTGATTACTTCAATTATGGCACATCGGAGATTTCAACGTCTGGGGTATTCTCCGAGAAATTGGGAACAACCAATACAAGCAGCCTGTCGAAAGATGGGACGTCTCTTCCTCAAACCGGCTCCCTACCTTCATCATACGTGATGCAGAAAAATACCCCATCTAGGCCACATCGTGACTTGATTTCTAGTGATCTTCGACGCAACGATCTCAAAGTCTCCATCGCCAGCGACTTGAATATAGACGATCAGTTCCAATTTGGGACGTTGACGAAGAAAGAGGGACTTGAAAGCTTGGAAAGCATTGTAAGAATTAAGAATGCGGAGGCGGGAATGTTTCAGAACAAGGCGGATGAGGCACGGAGGGAGGCTGAACGACTGAGACAAATAATCAATGCGAAGTCGGAGAAACTGGACGAAGACTATGCGGAGAAGATCGGGAAGCTGTGCTTGAAAGAGGCGGAAGATAGGCGGAGGAAGAAGGCGGAGGAGGTGAAGGTATTGGAGAACTCTCAAATAGATTATTACAACATGAAGAAGAGAATGCAGAAGGAGATCGCAGGGTTGTTGGAGAGGATGGAAGTGACCAAAAAGCAAGTAGTGTGA 2304 46.09 MFDGKDLASDGENSRTKGIGSREDSKFAGIGHSGSQELTLSYLCENSKLGSPGFAASFDKGNYKGKEVLFSENCNDDDKWVERDFLNLNSNRGNQSKREVEEEIDRGENRGKKPKLETLNLSLALPEVSLSLTASNALQNEDPPPVPSKPCRSLQSLAPSMNNTQTTCSNDFTAASLSYSYSHQFSHNPSCSLTRNSTENFEYSVGRDDHIWNCGEGTNGSVHSRFKPLGDGVALSNHGGGLNSLSQGNRPSNKEACNTSNDHSFFPSELLARPRMEVKSGNSIGRRSENLERVEGSSRPERILREVVSESISVMSQIVQELPDETLASVKDYLKDVIAMPDKRDELSSLQKRLERRSDLNKEALSKCHKAQLEILVAVKMGLVSFISGKSRCSIAELVDILLFLKCRNCKSVIPVDDCDCKICSANKGFCSSCMCPICLNFDCANNTCSWVGCDVCSHWCHAACGIEKNLIRPGPSLKGPSGTTEMQFHCIACNHASEMFGFVKDVFVYCAKNWGVETLMKELECVKRIFIGSDDYKGKDLYIKAAQILAKLERKALAPWEACNIILDYFNYGTSEISTSGVFSEKLGTTNTSSLSKDGTSLPQTGSLPSSYVMQKNTPSRPHRDLISSDLRRNDLKVSIASDLNIDDQFQFGTLTKKEGLESLESIVRIKNAEAGMFQNKADEARREAERLRQIINAKSEKLDEDYAEKIGKLCLKEAEDRRRKKAEEVKVLENSQIDYYNMKKRMQKEIAGLLERMEVTKKQVV 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4636091 4640237 + Cp4.1LG13g06570.1 Cpe13g00430 479628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00430 767 CDD PHD_OBE1_like 435 494 - -
Cpe13g00430 767 Coils Coil 745 765 - -
Cpe13g00430 767 MobiDBLite consensus disorder prediction 1 30 - -
Cpe13g00430 767 Coils Coil 717 737 - -
Cpe13g00430 767 MobiDBLite consensus disorder prediction 95 113 - -
Cpe13g00430 767 MobiDBLite consensus disorder prediction 239 261 - -
Cpe13g00430 767 MobiDBLite consensus disorder prediction 90 113 - -
Cpe13g00430 767 Pfam PHD - plant homeodomain finger protein 408 529 IPR032881 -
Cpe13g00430 767 MobiDBLite consensus disorder prediction 238 261 - -
Cpe13g00430 767 MobiDBLite consensus disorder prediction 591 623 - -
Cpe13g00430 767 Pfam Coiled-coil region of Oberon 632 756 IPR032535 -
Cpe13g00430 767 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 318 340 IPR004082 -
Cpe13g00430 767 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 357 372 IPR004082 -
Cpe13g00430 767 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 372 387 IPR004082 -
Cpe13g00430 767 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 398 419 IPR004082 -
Cpe13g00430 767 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 442 462 IPR004082 -
Cpe13g00430 767 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 515 534 IPR004082 -
Cpe13g00430 767 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 663 683 IPR004082 -
Cpe13g00430 767 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 702 724 IPR004082 -
Cpe13g00430 767 PANTHER PROTEIN OBERON 3 15 766 - -
Cpe13g00430 767 MobiDBLite consensus disorder prediction 1 22 - -
Cpe13g00430 767 Coils Coil 676 707 - -
Cpe13g00430 767 MobiDBLite consensus disorder prediction 591 627 - -
Cpe13g00430 767 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 15 766 IPR004082 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00430 - - - csv:101209125 1334.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00430 Cpe-Chr13:4636091 Cpe17g00700 Cpe-Chr17:5580492 1.25E-12 dispersed
Cpe13g00430 Cpe-Chr13:4636091 Cpe12g00835 Cpe-Chr12:7412506 9.68E-127 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g537 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo11g00963 . . . . . . . Cmo04g02238 Cmo15g00924 Cma04g02146 Cma15g00885 Car04g02079 Car15g00832 Cpe13g00430 . Bhi12g00970 . . . . . Lcy10g1592 Cla01g00657 Cam01g0687 Cec01g0679 Cco01g0707 Clacu01g0676 Cmu01g0650 Cre09g1857 Lsi09g00710 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005873 3 1 1 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00430 Cpe_Chr13 FPKM 10.17618 10.670325 13.713516 13.024094 17.663038 14.147451 16.920237 14.781174 12.277814 14.682408