Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00434 ATGTTGGCTGTTGGTAGCCCTTTTACCAGTCTTCGCACGAGCTCTAGTTGTAATGCTTTGCTCAGGGAACTTCAGCAAATATGGAACGACATTGGCGAGAGTGAAGCTGACAAAGACCGCATGCTCCTAGAATTGGAGATGGAATGCTTAGAAGTGTACCGGCGAAAGGTGGAGGAAGCTGCAAATGCCAAGGCGCGGCTCCATCAATCCGTTGCATTGAAGGAGGCTGAGGTTGCAACATTGATGGCTGCTCTCGGTGAACTATCTTCTCCGAGTCAAATTGAGAAGAGGTCCAAAACATTGAAAGAAAAGCTTGCTTCTGTCACTCCCTTAGTAGAAGAATTGATGAAGAAGAAAGAAGAGCGTTTGAAACAATTTGCTGATATAAAAGCCCAAATCGAGAAGTTCAGCGTCGAGATCTCGGGGTATAGCAACCATCTTAATGATCACATGAACATCAGTACTTTAAGCTTGGAAGAAACAGACCTGTCTTTGAGAAAGCTTAATGAGTATCAAACACATCTTTGCACCTTACAGAAGGAGAAGTCTGATCGACTTCATAAGGTTTTGGAACATGTTAGTGAGGTCCATTCTCTCTGTAGTGTCCTTGGTTTGGATTTCGGCCAGACCGTTAGCGAGGTGCATCCGAGCTTAGAAAGAACGAGCGTCGAACAAGCTACAAATATCAGCAATAGAACATTGGAAGGCTTAGAACACACCATTCTTACATTGAAAACAGAAAGGAAAACTCGAATCCAAAAGTTGAAGGACATTTTGACATCATTATTTGAGCTTTGGAATTTGATGGATTCATCACATGATGAAAAGCGTAAATTTTCGCGGATTACTTCCATCATGCGTGTATCCGAAACAGAAGTCACCGAACCGGGTCTTCTCTCCACAGAGACAATTGAACAGGCATCAGCAGAAGTTGAGAGGTTAACTCAACTAAAAGCGGGTCGAATGAAACAACTCGTCCTGAAGAGGAGGTCTGAGTTAGAGGAGATTTGTAGAATGGCTCACATTGAAGCAGATCCTAGCACAGCTCCAGAGAAATCAAATGCTTTGATAGATTCAGGACTACTAGATCCTTCTGAGCTCCTTGCAAACATTGAAGTGCAAATCGTCAACGTGAAGGAAGAAGCCACCAGCAGAAAAGAAATAATGGATAGAGTAGACCGTTGGCTATCAGCATGTGAGGAAGAAAAATGGCTTGAAGAGTATAATCAAGACGAGAATCGTTACAATGCAGGGAGAGGTTCACATGTTAATCTGAAACGAGCAGAGCGAGCGAGATTGAGTGTTAGCAAAATCCCAGCTATTGTTGATAATCTGATAAACAGAACGTTGGCCTGGGAAGATGAAAGGAAGACAATGTTTCTCTATGATGGGGCGAGATTGGTGGCTATACTTGAAGACTATAAATTAAGTAGACAGCAGAGAGAAGAGGAGAAGAGGAGACACAGGGATCAAAAGAAACTCCAAGATATGCTTCTCACTGAGAAGGAAGCTACGTACGGATCTAAACCCAGTCCTCGGAGGAGCAACAGCTTTAGGAAGACGAATGGATATCGAGCGAATGGGAATGGATCAATGACACCCACACCTCGTCGAAACTCTGTTGGTGGAGCGACCCCAGAGCTCTTGACTCCTAGATCATATTCGGGTCGCCAAAATGGATACTTCAAAGAAATGAGGAGGTTGTCTACTGCACCATTGAACTTTGTGGCAATGTCCAGGGATGATACAATGTCATATGCTTCCATTTATGAAGGATCTGACACAGGTTCCCCTCCCCAGAGTTAA 1806 43.8 MLAVGSPFTSLRTSSSCNALLRELQQIWNDIGESEADKDRMLLELEMECLEVYRRKVEEAANAKARLHQSVALKEAEVATLMAALGELSSPSQIEKRSKTLKEKLASVTPLVEELMKKKEERLKQFADIKAQIEKFSVEISGYSNHLNDHMNISTLSLEETDLSLRKLNEYQTHLCTLQKEKSDRLHKVLEHVSEVHSLCSVLGLDFGQTVSEVHPSLERTSVEQATNISNRTLEGLEHTILTLKTERKTRIQKLKDILTSLFELWNLMDSSHDEKRKFSRITSIMRVSETEVTEPGLLSTETIEQASAEVERLTQLKAGRMKQLVLKRRSELEEICRMAHIEADPSTAPEKSNALIDSGLLDPSELLANIEVQIVNVKEEATSRKEIMDRVDRWLSACEEEKWLEEYNQDENRYNAGRGSHVNLKRAERARLSVSKIPAIVDNLINRTLAWEDERKTMFLYDGARLVAILEDYKLSRQQREEEKRRHRDQKKLQDMLLTEKEATYGSKPSPRRSNSFRKTNGYRANGNGSMTPTPRRNSVGGATPELLTPRSYSGRQNGYFKEMRRLSTAPLNFVAMSRDDTMSYASIYEGSDTGSPPQS 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4675925 4682634 + Cp4.1LG13g06480.1 Cpe13g00434 479632

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00434 601 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 10 600 IPR007145 GO:0000226|GO:0008017
Cpe13g00434 601 MobiDBLite consensus disorder prediction 478 499 - -
Cpe13g00434 601 MobiDBLite consensus disorder prediction 478 556 - -
Cpe13g00434 601 Coils Coil 50 70 - -
Cpe13g00434 601 PANTHER 65-KDA MICROTUBULE-ASSOCIATED PROTEIN 6 10 600 - -
Cpe13g00434 601 Pfam Microtubule associated protein (MAP65/ASE1 family) 19 515 - -
Cpe13g00434 601 Gene3D - 375 508 - -
Cpe13g00434 601 Coils Coil 471 491 - -
Cpe13g00434 601 MobiDBLite consensus disorder prediction 509 540 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00434 K16732 PRC1, ASE1, MAP65; Ase1/PRC1/MAP65 family protein - csv:101208264 1049.27
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01863 Cpe13g00434 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00063 Cpe-Chr7:303368 Cpe13g00434 Cpe-Chr13:4675925 3.60E-64 transposed
Cpe09g00478 Cpe-Chr9:3148842 Cpe13g00434 Cpe-Chr13:4675925 1.26E-132 transposed
Cpe11g00365 Cpe-Chr11:2009521 Cpe13g00434 Cpe-Chr13:4675925 3.35E-44 transposed
Cpe13g00071 Cpe-Chr13:553747 Cpe13g00434 Cpe-Chr13:4675925 2.77E-152 transposed
Cpe14g00145 Cpe-Chr14:798963 Cpe13g00434 Cpe-Chr13:4675925 1.06E-130 transposed
Cpe14g00738 Cpe-Chr14:5545849 Cpe13g00434 Cpe-Chr13:4675925 0 transposed
Cpe01g01863 Cpe-Chr1:15955308 Cpe13g00434 Cpe-Chr13:4675925 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g550 . Blo16g01197 . . . . . . . . . . . . . . Cpe01g01863 . . . . . . . . . . . . . . . . Cone6ag0334 Cone9ag0370 . . . . . . . . . . . Bma06g00578 . Cmo04g02243 Cmo15g00917 Cma04g02150 Cma05g00061 Car04g02084 Car05g00051 Cpe13g00434 . Bhi12g00978 . . . Hepe02g2591 . Lcy10g1585 Cla01g00662 Cam01g0693 Cec01g0685 Cco01g0713 Clacu01g0681 Cmu01g0656 Cre09g1850 Lsi09g00716 Csa05g01289 . Cme09g01291
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007189 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00434 Cpe_Chr13 FPKM 97.128304 103.815636 121.613831 131.769516 50.833092 42.07375 56.605694 102.631516 113.37854 124.449448