Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00436 ATGTTGAAACCTTCTTCTTCTTCTTCTTCTTCTTCTGCAGCAGCAGCAGCAGCAGCCTCAGCAGCATCCACACCTTATTCTTCTGCTGCCCCTCCTCTTCTTCCTCCTCCTCCTCCTCCTCCCCCTCCTCCCAATTCCGACCATGGCCTCACCACCAAAAGAAAAAGAAGACCCGCCGGCACTCCAGATCCGGATGCTGAAGTCGTTTCCTTATCCCCCAAAACCCTTCTCGAATCCGATCGCTACGTTTGTGAGATATGCAACCAAGGCTTCCAAAGGGATCAGAATCTCCAAATGCACCGCCGCCGCCACAAAGTACCTTGGAAGCTACTCAAGAAGCCACACACGGTGGATGCCATCAAAAAAAAGGTCTTTGTTTGCCCCGAGCCGACATGTCTCCACCACGACCCTTGCCATGCCCTTGGTGACCTCGTTGGCATCAAAAAACACTTCCGCAGAAAACACAGCAACCAAAAGCACTGGGTTTGTGACAAATGCTCTAAAGCTTATGCTGTTCATTCCGATTTCAAAGCTCACCTCAAAACCTGCGGTACCCGTGGCCATTCCTGTGATTGTGGCCGTGTCTTTTCCAGAGTGGAGAGCTTTATAGAACACCAAGACGCTTGCAATATCCGCCAGATGAGGTCCGATCAGTGGCAGCTCATGCCATTATCACTCCCATTACTACAAACCGCTAATCCACTACGAGGGTTTCCAATTTTATCATCAAACAAAGACCATGATCTCAATCTCCATCTCTCTTCTCCAAGCTCCGCCTTTTTGAATCTCTCAATTGGGTCCAACAAGGAGCCGAATGACAAGCGTCAGCTCGAGCTCGCAATCGAGGAGAAAGCATACGCAGACGAAGCAAGACGAGACGCGAAGCGACAAATCGAAATCGCCGAGGTTGAGTTTACCAATGCCAAAATGATAAGGCAGCAAGCTCAAGCGGAATTGGAAAAAGCAAGGATCTTGAAGGAAGAAGCCAGCCGGAAAATGAGCTCCACCATTATGGAAATCACTTGTGAAACTTGTCGGTTACATTTTCACATGAGCTCCGTCGCAGCAGCCGAAGAGACCTCGCTCGCCATCAGCTACATGTCGTCTGCTACGACAGAAGGTGACGGAGAATGA 1134 49.82 MLKPSSSSSSSSAAAAAAASAASTPYSSAAPPLLPPPPPPPPPPNSDHGLTTKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKKPHTVDAIKKKVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNQKHWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNIRQMRSDQWQLMPLSLPLLQTANPLRGFPILSSNKDHDLNLHLSSPSSAFLNLSIGSNKEPNDKRQLELAIEEKAYADEARRDAKRQIEIAEVEFTNAKMIRQQAQAELEKARILKEEASRKMSSTIMEITCETCRLHFHMSSVAAAEETSLAISYMSSATTEGDGE 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4697519 4699328 + Cp4.1LG13g06460.1 Cpe13g00436 479634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00436 377 MobiDBLite consensus disorder prediction 1 72 - -
Cpe13g00436 377 SMART c2h2final6 125 155 IPR013087 -
Cpe13g00436 377 SMART c2h2final6 82 104 IPR013087 -
Cpe13g00436 377 SMART c2h2final6 161 188 IPR013087 -
Cpe13g00436 377 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Cpe13g00436 377 Coils Coil 308 332 - -
Cpe13g00436 377 Gene3D Classic Zinc Finger 60 125 - -
Cpe13g00436 377 SUPERFAMILY beta-beta-alpha zinc fingers 79 105 IPR036236 -
Cpe13g00436 377 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 45 222 - -
Cpe13g00436 377 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 269 377 - -
Cpe13g00436 377 MobiDBLite consensus disorder prediction 29 47 - -
Cpe13g00436 377 PANTHER OS03G0310200 PROTEIN 269 377 IPR039288 GO:0009630
Cpe13g00436 377 PANTHER OS03G0310200 PROTEIN 45 222 IPR039288 GO:0009630
Cpe13g00436 377 SUPERFAMILY Formin homology 2 domain (FH2 domain) 35 154 - -
Cpe13g00436 377 MobiDBLite consensus disorder prediction 1 27 - -
Cpe13g00436 377 Gene3D Classic Zinc Finger 146 220 - -
Cpe13g00436 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 104 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01865 Cpe13g00436 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00436 Cpe-Chr13:4697519 Cpe20g00005 Cpe-Chr20:40531 1.29E-139 dispersed
Cpe01g01865 Cpe-Chr1:15978666 Cpe13g00436 Cpe-Chr13:4697519 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50405 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00436 K25871 - csv:101210468 572.392