Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00437 ATGGAAAGAACTGTCTTTCAACTTTCACTTCTTCCTCTTGCTTTGCCACTGATCTTTATCTTCTTTGATTTGGCTTCATCAGCAGAGCAACAGGTCGTGACTTCAATAAAAACTGATGCTGCAGCTCTTCTTAAGTTCAGGGCTTTGATTGACAAGGACCCAAATGGCGTATTGACCAATTGGAAGCTTGAAAACGATCCATGTTCTTGGTATGGAGTTTCATGCCAATCTGGACGAGCGGTTGCTCTTGATCTGAGCGGCTGTAATCTTGCAGGGAATGTTTATTTTGATCCTCTGTCTTCTATGGATATGTTGTTGTCTTTGAACTTGTCTACAAACTCTTTCACTATAAACTCAACCACTTTGCTTCAACTTCCTTATAATTTGCAGCAACTTGAGCTCTCTCTTGCCAAAGTTGTAGGTCGTGTGCCTGATAATCTTTTCTCAAGCTGTCCAAATCTTGTGTTTGTGGATCTTTCATTCAACAACTTGACTGCCTCTCTGCCTGAAAATCTTCTGTTCAATGCTAATAAGCTTCAAGATCTTGATCTCTCTTACAACAATCTAACAGGGTCCATCTCAGGATTGAGAATTCATGAGAATTCTTGCAATTCTTTGTTGCGAGTTGAACTTTCAGCTAATCAAATCGTTGGTTCGATTCCGAGTTCGATTTCAAACTGCACGAATCTGCAAACACTTGGTTTGTCATACAATTCTCTCAGTGGGGAAATCCCAGGATCTATAGGGAAACTCAGTAGTTTACAAAGGGTGGATCTATCTCATAACCAGCTCACTGGTTGGCTCCCTTTTGATTGGAGAAATGCCTGCAATTCACTTCAAGAACTAAAGCTTTGTTACAACAACATTTCTGGTGTAATTCCTGCTTCCTTCTCTGCTTGTTCTTCCCTTCAGATTCTGGATCTTTCAAACAACAACATATCTGGTCCTTTACCAGATGCCATCTTCAAGAATCTTGTCTCTTTACAGAGCTTGTTATTGAGTAATAACATAATCTCTGGATCATTGCCTTCATCCATATCTCACTGCAAGAAACTTCAGCTTGTGGACTTAAGTTCCAATAGAATTTCTGGTTTAATCCCACCAGGTATATGCCCAGGAGCTGAATCACTCCAGGAACTGAAAATGCCAGACAATCTCATCATAGGAGGAATCCCACCAGAAATCTCGTTGTGTTCACAGTTAAAGACAATTGATTTTAGTCTAAACTATCTGAATGGCTCCATACCTGCAGAACTTGGAAGGCTTCAGAATCTTGAACAGTTGATAGCATGGTTCAATAGCTTAGAAGGGAAAATCCCACCAGAATTAGGGAAGTGTAGAAGCTTGAAGGATCTTATACTGAATAATAATCGTTTAAGTGGCGAAATCCCCACTGAATTGTTCAGTTGTAGCAATCTTGAATGGGTTTCACTCACTAGTAATGAACTCAATGGTGAAGTCCCAAAAGAGTTTGGTCTTTTGTCAAGGCTGGCTGTGCTGCAACTCGGGAACAATAGCTTAAGTGGTCAGATACCAGGAGAGTTGGCAAACTGCAGCACTTTAGTTTGGATGGATTTAAACAGCAATAAGCTTACAGGGGAAATCCCTCCTAGACTTGGGAGGCAGCTTGGAGCCAAGTCATTGAATGGGATTCTTTCTGGAAACACTTTAGTGTTCGTCCGAAATGTTGGGAATTCGTGTAAAGGAGTTGGGGGTTTGTTGGAGTTTGCTGGAATTAGACCTGAAAGACTACAGCAGGAACCATCACTAAAGACCTGTGATTTCACTAGACTGTACTCTGGTCCGGTTCTAAGTCTGTTTACAAAGTACCAAACTTTGGAGTACTTGGATCTTTCTTACAATGAGCTTCGTGGGAGAATACCAGAAGAGTTTGGAGATATGGTTGCCTTGCAGGTTCTTGAATTATCACACAACCAACTTTCTGGAGAGATTCCGACCTCGTTCGGCCGCTTAAAGAACTTGGGTGTGTTTGATGCATCACATAACAGACTGCAGGGTCATATTCCAGATTCATTCTCAAACTTATCATTCTTAGTTCAAATTGATCTATCTTACAATGAACTAACGGGGAGAATTCCATCAAGGGGGCAGCTCAGTACACTGCCTGCAAGTCAGTATGCAAACAATCCAGGACTTTGTGGAGTTCCCTTGCCTGAATGCCAGAGTGAGGACCAGCCACTGACAAGTCCTAATGTTGAGCCTGGAAAAGGAAGAACAAAGGCAGAAGTAGGGTCATGGGTTAACAGTATTGTTTTAGGTGTTCTTATTTCCATTGCCAGTGTCTGCATTTTGATTGTATGGGCTATTGCCATGAGGACAAGACGAAAAGAAGCAGAGGAAGTGAAGATGCTCAATAGTTTACAAGCAATACATGCTCCTACTACATGGAAAATTGACAAAGAGAAAGAGCCATTGAGTATCAATAGCTTCAGGTGCACGGCAAAAGGCGATGTCTATTCGTTCGGTGTCGTCCTGTTAGAACTCTTGACAGGGAAACGACCAACGGATAAGGAGGATTTCGGGGACACCAACTTAGTGGGATGGGTGAAAATGAAAGTAAATGATGGAAAACAAATGGAAGTGATTGATCCAGAATTGCTGTCGGTAACCAAAGCAAGCGATGAATCAGAAGCAGAAGAGGTTAAAGAAATGGTTAGATATTTGGAGATAACTCTTCGGTGTGTAGAAGAGTTTCCTTCCAAAAGGCCTAACATGTTGCAGGTGGTGGCCATGCTGCGAGAATTGATGCCTGGATCAACCAATGGAAGCAGCAACAGTGCTTGA 2805 41.89 MERTVFQLSLLPLALPLIFIFFDLASSAEQQVVTSIKTDAAALLKFRALIDKDPNGVLTNWKLENDPCSWYGVSCQSGRAVALDLSGCNLAGNVYFDPLSSMDMLLSLNLSTNSFTINSTTLLQLPYNLQQLELSLAKVVGRVPDNLFSSCPNLVFVDLSFNNLTASLPENLLFNANKLQDLDLSYNNLTGSISGLRIHENSCNSLLRVELSANQIVGSIPSSISNCTNLQTLGLSYNSLSGEIPGSIGKLSSLQRVDLSHNQLTGWLPFDWRNACNSLQELKLCYNNISGVIPASFSACSSLQILDLSNNNISGPLPDAIFKNLVSLQSLLLSNNIISGSLPSSISHCKKLQLVDLSSNRISGLIPPGICPGAESLQELKMPDNLIIGGIPPEISLCSQLKTIDFSLNYLNGSIPAELGRLQNLEQLIAWFNSLEGKIPPELGKCRSLKDLILNNNRLSGEIPTELFSCSNLEWVSLTSNELNGEVPKEFGLLSRLAVLQLGNNSLSGQIPGELANCSTLVWMDLNSNKLTGEIPPRLGRQLGAKSLNGILSGNTLVFVRNVGNSCKGVGGLLEFAGIRPERLQQEPSLKTCDFTRLYSGPVLSLFTKYQTLEYLDLSYNELRGRIPEEFGDMVALQVLELSHNQLSGEIPTSFGRLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSYNELTGRIPSRGQLSTLPASQYANNPGLCGVPLPECQSEDQPLTSPNVEPGKGRTKAEVGSWVNSIVLGVLISIASVCILIVWAIAMRTRRKEAEEVKMLNSLQAIHAPTTWKIDKEKEPLSINSFRCTAKGDVYSFGVVLLELLTGKRPTDKEDFGDTNLVGWVKMKVNDGKQMEVIDPELLSVTKASDESEAEEVKEMVRYLEITLRCVEEFPSKRPNMLQVVAMLRELMPGSTNGSSNSA 934
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4702710 4706117 - Cp4.1LG13g06430.1 Cpe13g00437 479635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00437 934 Gene3D Transferase(Phosphotransferase) domain 1 805 932 - -
Cpe13g00437 934 SUPERFAMILY RNI-like 209 538 - -
Cpe13g00437 934 PRINTS Leucine-rich repeat signature 251 264 - -
Cpe13g00437 934 PRINTS Leucine-rich repeat signature 179 192 - -
Cpe13g00437 934 Pfam Brassinosteroid receptor island domain 549 607 IPR045381 -
Cpe13g00437 934 Gene3D Ribonuclease Inhibitor 176 727 IPR032675 -
Cpe13g00437 934 ProSiteProfiles Leucine-rich repeat profile. 178 200 IPR001611 GO:0005515
Cpe13g00437 934 Gene3D - 552 608 - -
Cpe13g00437 934 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 24 815 - -
Cpe13g00437 934 SUPERFAMILY Protein kinase-like (PK-like) 817 919 IPR011009 -
Cpe13g00437 934 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Cpe13g00437 934 Pfam Protein tyrosine and serine/threonine kinase 813 919 IPR001245 GO:0004672|GO:0006468
Cpe13g00437 934 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 816 923 - -
Cpe13g00437 934 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 24 815 - -
Cpe13g00437 934 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 816 923 - -
Cpe13g00437 934 Gene3D Ribonuclease Inhibitor 38 149 IPR032675 -
Cpe13g00437 934 SUPERFAMILY L domain-like 593 723 - -
Cpe13g00437 934 SUPERFAMILY L domain-like 65 271 - -
Cpe13g00437 934 SMART LRR_typ_2 251 274 IPR003591 -
Cpe13g00437 934 SMART LRR_typ_2 634 658 IPR003591 -
Cpe13g00437 934 SMART LRR_typ_2 151 175 IPR003591 -
Cpe13g00437 934 SMART LRR_typ_2 494 518 IPR003591 -
Cpe13g00437 934 SMART LRR_typ_2 447 470 IPR003591 -
Cpe13g00437 934 SMART LRR_typ_2 422 446 IPR003591 -
Cpe13g00437 934 SMART LRR_typ_2 325 349 IPR003591 -
Cpe13g00437 934 SMART LRR_typ_2 300 324 IPR003591 -
Cpe13g00437 934 Pfam Leucine rich repeat 278 336 IPR001611 GO:0005515
Cpe13g00437 934 Pfam Leucine rich repeat 206 264 IPR001611 GO:0005515
Cpe13g00437 934 Pfam Leucine rich repeat 606 647 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00437 - - - csv:101208987 1431.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00372 Cpe-Chr10:2199330 Cpe13g00437 Cpe-Chr13:4702710 4.42E-171 dispersed
Cpe13g00437 Cpe-Chr13:4702710 Cpe19g00558 Cpe-Chr19:4712113 6.33E-25 dispersed
Cpe01g01866 Cpe-Chr1:15984614 Cpe13g00437 Cpe-Chr13:4702710 3.93E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g557 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0332 Cone9ag0368 . . . . . . . . . . . Bma06g01143 . Cmo04g02248 Cmo15g00912 Cma04g02153 Cma15g00877 Car04g02087 Car15g00825 Cpe13g00437 . Bhi12g00982 . . . . . Lcy10g1582 Cla01g00665 . . . . . . Lsi09g00720 Csa05g01293 . Cme09g01287
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008843 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 0 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62786 PF07714 PK_Tyr_Ser-Thr 1.70E-05 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00437 Cpe_Chr13 FPKM 20.462687 21.270119 12.496711 12.440539 5.517005 3.422732 5.830312 8.708117 7.747481 10.29453