Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00440 ATGGCGTCGTCTAACCCTTGTTCAAAATCCCCTGAGTCAGTACATTCCTCACCATTTGCTTCTCGCTATGTTCAAAACCCAACCCCAAAATTTGTAATGCCTGAAAACTCCATGTCCAAGGAGGCAGCAGCTCAGATCATCAACGACGAGCTCATGCTAGATGGCAACCCACGTCTCAATTTGGCATCCTTCGTCACCACATGGATGGAGCCCGAATGCGACAAGCTAATCATGGACTCGATCAATAAAAACTACGTCAATATGGACGAGTACCCTGTTACCACCGAGATTCAAAATCGGTGTATCAACATGATTGCCCATTTATTCAACGCACCATTGGGAGATTCCGATGTAGCGGTGGGAGCTGGGACGGTGGGGTCGTCAGAAGCCATCATGTTGGCAGGGCTTGCCTTCAAGAGGAAGTGGCAGAGTAAGCGGAAGGCGGAAGGGAAGGCTTTTGATAAGCCTAATCTTGTGACGGGTGCTAATTTTCATGTTTGTTGGGAGAAATTTTGTAGGTATTTTGAAGTGGAGTTAAGGGAAGTTAAAGTTAGAGAAGGGTATTATGTTATGGACCCTTTTGAGGCTGTTGAGATGGTGGATGAGAACACTATTTGTGTTGCTTCAATTTTTGGTTCCACTTATAATGGGGAATTTGAAGATGTGAAGGCGTTGAATGATTTGTTGATGAAGAAGAATAAGGAAAGTGGATGGGATACGCCTATTCATGTGGATGCGGCTAGTGGTGGGTTCATAGCGCCGTTTTTGTATCCAGAGCTGGAATGGGACTTCCGGCTTCCTTTGGTGAAGAGTATCAATGTGAGTGGGCATAAGTATGGGCTTGTGTATGCTGGGATTGGGTGGGTCATTTGGAGAACTACACAAGACTTGCCTCAACAACTCATTTTTCATATTGATTATCTTGGAGCTGATCAGTCTACCTTCACTCTCAACTTCTCCAAAGGGTCAAGCCAGGTGATGCAAAACTGTCGCGACAACGCCATGGCATTGAAGGAAGGACTACAAAACACGGGGCAATTCACGATAGTGTCGAAGGACATCGGCGTGCCAGTGGTGGCATTTTCCCTCAAAGATCGAAGTACCCACGACGAGTTCAAGGTGTCGGAGATGTTGCGGCGGTTCGGGTGGATTGTGCCGGCTTATCGAATGCCTAAGGGAGCCAAGCATGTATCCGTTCTTCGTGTTGTGGTTAGAGAAGATTTCTCTCGCGCCCTTGCAGAGCGGCTTTTGGTTGATATCATTAAGGTGTTGGCGGAGCTTGATACTCTTCCACCCAAAAGTGCTGCGAAAGCCATCGCCTTGGCGAAGGACGAGGATGCAGCGAATGATAGCGCAGTGAAGAAGACGGCAGAGGAGACAGAAATGGAAATTGTGAATGCTTGGATCGACATGATAACAAAGGCTACCAAAATCACTTGTTGCTGA 1446 47.1 MASSNPCSKSPESVHSSPFASRYVQNPTPKFVMPENSMSKEAAAQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSINKNYVNMDEYPVTTEIQNRCINMIAHLFNAPLGDSDVAVGAGTVGSSEAIMLAGLAFKRKWQSKRKAEGKAFDKPNLVTGANFHVCWEKFCRYFEVELREVKVREGYYVMDPFEAVEMVDENTICVASIFGSTYNGEFEDVKALNDLLMKKNKESGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTTQDLPQQLIFHIDYLGADQSTFTLNFSKGSSQVMQNCRDNAMALKEGLQNTGQFTIVSKDIGVPVVAFSLKDRSTHDEFKVSEMLRRFGWIVPAYRMPKGAKHVSVLRVVVREDFSRALAERLLVDIIKVLAELDTLPPKSAAKAIALAKDEDAANDSAVKKTAEETEMEIVNAWIDMITKATKITCC 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4739919 4742599 + Cp4.1LG13g06470.1 Cpe13g00440 479638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00440 481 Gene3D - 3 66 - -
Cpe13g00440 481 SUPERFAMILY PLP-dependent transferases 19 427 IPR015424 -
Cpe13g00440 481 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 18 427 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cpe13g00440 481 Gene3D - 67 343 IPR015421 GO:0003824
Cpe13g00440 481 MobiDBLite consensus disorder prediction 1 21 - -
Cpe13g00440 481 Pfam Pyridoxal-dependent decarboxylase conserved domain 34 322 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cpe13g00440 481 PANTHER GLUTAMATE DECARBOXYLASE 4 475 - -
Cpe13g00440 481 Gene3D - 344 431 - -
Cpe13g00440 481 PANTHER GLUTAMATE DECARBOXYLASE 4 475 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01872 Cpe13g00440 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01974 Cpe-Chr1:16888936 Cpe13g00440 Cpe-Chr13:4739919 0 dispersed
Cpe02g01093 Cpe-Chr2:10013672 Cpe13g00440 Cpe-Chr13:4739919 0 dispersed
Cpe13g00440 Cpe-Chr13:4739919 Cpe13g00539 Cpe-Chr13:5469153 0 dispersed
Cpe01g01871 Cpe-Chr1:16063845 Cpe13g00440 Cpe-Chr13:4739919 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00440 K01580 - csv:101208026 779.63