Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00454 ATGAATGGAGATGTAGCTACGGTGGTAACGGCGGCCGCACCGACGGGTTCAGCAGAGCCCCAGTACGTTAGGGCTAAGACTTCTGTATGGTGGGACATCGAGAACTGTCAGGTCCCTAAGGGCTGCGATCCTCACGCAATCGCCCAAAACATCAGTTCCGCCCTCGTGAAAATTAACTACTGCGGTCCTGTTTCCATTTCCGCCTACGGTGATACTAATCGCATTCCCAACTCTATTCAGCAAGCTCTCTCCAGTACTGGCATCGCCTTGAATCACGTCCCTGCCGGTGTTAAGGATGCAAGTGACAAGAAGATTCTAGTCGATATGTTGTTTTGGGCGGTCGATAACCCTGCTCCTGCAAATTATTTGCTAATTTCTGGGGATAGAGATTTTTCTAACGCCCTTCATCAATTAAGAATGAGAAGATATAATATTCTTCTTGCACAGCCACAAAGGGCTTCTGCACCACTAGTTGCAGCAGCAAAGAGTGTTTGGCTTTGGATGAGTCTTGTAGCTGGAGGACTCCCAATATCCAGTGCGGAATCATCTCAACTCGTGAACGGTACCCTTACTTCTGACCCTCAAATATCTCAGAACTCTGGACTTGATCATAATCAGCAGACAGCACAAGCTATAGTATACAAACCTGAAAATGTCTCTTTGGGAAACAACAAACATAAAGGTAAATCTATACATAAAAACTCCAACCAACCAGTCCTATCCAGAGCCTTAAGCTCGCCTGTTTCTAGGCACGAGGAAAACCCTAATTTTTTAAACCAACCAAATCATATCCAAGCAAAGCAGTTTAAGAAAGCACCTCATGAATTCTTCGGTAATAGCGGTAATAGCAGTTCTGTAGCCTCTTCTAGTCAGTCTACGCCAAATCTGCTTATTGAAAATTACACTCATGCTAGGACTGATGGTAGTGTTTCAATGGGTAGTTCCTCGAGTTACCAGCCTCCTCACGTCAGGCAAAAAACAATGCAGCTCCATCCTCCTTTTCGGCCAGATTATGTTTTTTCTCCTAACCCCGTTAATCGTAATTCTATCCCAGTCCCTACTCAACCCGATCTCTCTGCACCCAATATCAGTAAGCTGCATATCTCTGATCACCCCAATTATGCTATAAATCCTCAAAATTTTCATCATCAAGCTAGTGAATTTAGACCACATACTACGTCTCAAAACTTTGCCAACTTTAACTCGCCAGACAAAGGCCGTAGTCAGCATGGTAGCCAGTCATTCCATCATGATGCGTTTAATAAACGACATGCTCGTGATGTAGAGTATGCACCTCATTCATCTTCCACCACTCTTGTTAGAAGTTCTTCTTATAATGATGCCTGGGGATCTCAGGGGCAACCACCACCTTCGGAGTACATTCAAGGCCTTATTGGAGTTATTCTTCTTGCATTAAACACCCTGAAAATGGAAAAAATTAGTCCAAATGAGGCAAATATAACTGAGTGCATCCGATATGGAGACTTGAGAAACTGCAATACTGATGTAAAAATGGCACTTAATAGTGCGATAGAGCATAATATGGTAGTGAGGCATAATTTTGGAGCTGTGCAATTGTATGTTGGTAAAACAGAAAAATTGTGGAAGTGTGTGAACCCTCTAGGTGGGCATCCCAATCAATACCAAAAAGCTATATGGGATAAGATTCAGAATTTTTTGGCTTCTCCAGCTGGTCGTTCTGCAATAATGGCTTCTTCTTGCAGATATCAAGCAGCATTGATTCTAAGGAACGAATGCTTAACCGATTTTGCCTTGGGCGATGTGCTTCAGATTTTGTATATGATAACCTCAATGAAGAAATGGATTACTCATCATATTTCAGGATGGCAGCCAATTAATATTATGCTAACAGAAGGTAATACATATGGAATTTCAAGAACTGAACTTTGA 1911 42.54 MNGDVATVVTAAAPTGSAEPQYVRAKTSVWWDIENCQVPKGCDPHAIAQNISSALVKINYCGPVSISAYGDTNRIPNSIQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQRASAPLVAAAKSVWLWMSLVAGGLPISSAESSQLVNGTLTSDPQISQNSGLDHNQQTAQAIVYKPENVSLGNNKHKGKSIHKNSNQPVLSRALSSPVSRHEENPNFLNQPNHIQAKQFKKAPHEFFGNSGNSSSVASSSQSTPNLLIENYTHARTDGSVSMGSSSSYQPPHVRQKTMQLHPPFRPDYVFSPNPVNRNSIPVPTQPDLSAPNISKLHISDHPNYAINPQNFHHQASEFRPHTTSQNFANFNSPDKGRSQHGSQSFHHDAFNKRHARDVEYAPHSSSTTLVRSSSYNDAWGSQGQPPPSEYIQGLIGVILLALNTLKMEKISPNEANITECIRYGDLRNCNTDVKMALNSAIEHNMVVRHNFGAVQLYVGKTEKLWKCVNPLGGHPNQYQKAIWDKIQNFLASPAGRSAIMASSCRYQAALILRNECLTDFALGDVLQILYMITSMKKWITHHISGWQPINIMLTEGNTYGISRTEL 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4842711 4846486 + Cp4.1LG13g06360.1 Cpe13g00454 479652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00454 636 MobiDBLite consensus disorder prediction 390 416 - -
Cpe13g00454 636 MobiDBLite consensus disorder prediction 274 293 - -
Cpe13g00454 636 MobiDBLite consensus disorder prediction 219 261 - -
Cpe13g00454 636 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 15 619 - -
Cpe13g00454 636 MobiDBLite consensus disorder prediction 233 261 - -
Cpe13g00454 636 Gene3D - 21 169 - -
Cpe13g00454 636 MobiDBLite consensus disorder prediction 277 293 - -
Cpe13g00454 636 CDD PIN_limkain_b1_N_like 26 150 - -
Cpe13g00454 636 Pfam OST-HTH Associated domain 573 625 IPR025677 -
Cpe13g00454 636 Pfam NYN domain 26 162 IPR021139 GO:0004540
Cpe13g00454 636 PANTHER LIMKAIN B LKAP 15 619 IPR024768 GO:0005777|GO:0010468|GO:1903231
Cpe13g00454 636 MobiDBLite consensus disorder prediction 390 409 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00448 Cpe-Chr1:2588442 Cpe13g00454 Cpe-Chr13:4842711 1.66E-30 dispersed
Cpe13g00454 Cpe-Chr13:4842711 Cpe16g00066 Cpe-Chr16:1293251 1.42E-39 dispersed
Cpe13g00454 Cpe-Chr13:4842711 Cpe05g01099 Cpe-Chr5:7330666 3.93E-40 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00454 - - cmo:103503825 1046.96