Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00466 ATGAACGGGAAGGATGAATTTGAAGATGAGAGTAGGAGGAGTGATCCTATGAGTATCACCTCCGGCTGGCAATTTGCTGCTGCTGTTAGCAATGAGGATCTAAGTGTTTCTTCTTGTCCTTCAACTTCAATGTCTAACTTATTCACTCCAGCCCTTATGAACTCGGGATTCTGCAGCAGTTTTAATGAACAAAACAGCATAGTTACTGGAGAAGGTCTGAATTCTTTGAGATCTAATGGTGTGGATTGGAACCAACAAAATCCATGGATGAAAGGAGGTTTCCCAGGAAATGTTCATGGATTTCCAGCTAATTTATCTCAACTTCCAGCTGATTCAGCGTTCATAGAACGTGCAGCAAGGTTCTCCTGCTTCAACAGCGGAGTTTTCGGGGCTTCGCTGCCTGTCGGTGCTTTCGATATTTCAAACTCCATAGGCATTCATTCTAGACAAGAAGTTATGTCCAGAAATGTAGCCTCCAAGGATGGTTCTTTGCCCATGGAGCTTGAGGCTAAAGAAAAGAGTCCATCTAAGAATGAGACAGAATGTGAAATGTCTCAAGCCAGAGGTAAAGAATCCGATGAGGCCGGGTTCAGTGGCGGTCATGGCGAGCGATGCGTGTTGGAAGGTACTATCACAGAACCATCTACGGATGAACTATGCTCAAGGAAAAGGAAAAGGGATGAACAGAATATAGAACTTGGACAAGTCAAAGAAGCTCCCCAACAAATTAACCAAACTGCCAAGAATGGCGCATCGAATCAGCAGAAGGGAACACAAAACCCGAGTTCTACTACGAATAAACCTGCTGAAAAGCAAGGAAAACAGGATTCTCAGCCATCGGATGCTCCTAAAGAAGAATATATTCATGTTCGAGCTCGAAGAGGACAGGCAACAAACAGCCATAGTCTTGCTGAAAGGGTAAGAAGAGAGAAGATAAGTGAAAGAATGAGACTCCTTCAGGACCTCGTGCCCGGGTGCAGTAAGGTCACTGGCAAAGCTGTAATGCTTGATGAAATCATCAACTATGTACAGTCGTTGCAACGACAAGTCGAGTTCTTGTCAATGAAACTTGCAACAGTTAATCCCAGGCTGGATTTCAACATCGAAGAGCTCCTCACAAAAGAAATCATTCAATCAAAGGCTGGTCCATCCTTATTTAGTTTTCCTCCTGATATGCCTATGCCTTACCTCCCGCAACATCCGTCTCATCTAGGACTTATTCCGCCTTGTCTTCCAAACATGGCGAGCTCTCCGGACCTGCTACGAAGAACGATAAATTCCCAGCTAACTTCACTCGTTGGTGGATTCAAGGAGCCTGTTCAGATACCAAACGGGTGGGAGAACGAACTCCACAATGCTGTTCCAATGAGCTTTGATGTCGCTGCACCCACCAGTGGCCAAGATGTAGATGGTACTATTTGTTCAAGTTTACCCATGTGA 1440 44.86 MNGKDEFEDESRRSDPMSITSGWQFAAAVSNEDLSVSSCPSTSMSNLFTPALMNSGFCSSFNEQNSIVTGEGLNSLRSNGVDWNQQNPWMKGGFPGNVHGFPANLSQLPADSAFIERAARFSCFNSGVFGASLPVGAFDISNSIGIHSRQEVMSRNVASKDGSLPMELEAKEKSPSKNETECEMSQARGKESDEAGFSGGHGERCVLEGTITEPSTDELCSRKRKRDEQNIELGQVKEAPQQINQTAKNGASNQQKGTQNPSSTTNKPAEKQGKQDSQPSDAPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLTKEIIQSKAGPSLFSFPPDMPMPYLPQHPSHLGLIPPCLPNMASSPDLLRRTINSQLTSLVGGFKEPVQIPNGWENELHNAVPMSFDVAAPTSGQDVDGTICSSLPM 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4893153 4897199 - Cp4.1LG13g06110.1 Cpe13g00466 479664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00466 479 Gene3D - 293 367 IPR036638 GO:0046983
Cpe13g00466 479 MobiDBLite consensus disorder prediction 217 233 - -
Cpe13g00466 479 MobiDBLite consensus disorder prediction 157 283 - -
Cpe13g00466 479 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 294 365 IPR036638 GO:0046983
Cpe13g00466 479 PANTHER TRANSCRIPTION FACTOR BHLH49 160 475 - -
Cpe13g00466 479 PANTHER TRANSCRIPTION FACTOR BHLH49 35 152 - -
Cpe13g00466 479 SMART finulus 302 352 IPR011598 GO:0046983
Cpe13g00466 479 MobiDBLite consensus disorder prediction 165 198 - -
Cpe13g00466 479 Pfam Helix-loop-helix DNA-binding domain 299 347 IPR011598 GO:0046983
Cpe13g00466 479 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 296 346 IPR011598 GO:0046983
Cpe13g00466 479 MobiDBLite consensus disorder prediction 235 276 - -
Cpe13g00466 479 CDD bHLH_AtBPE_like 286 371 - -
Cpe13g00466 479 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 35 152 IPR024097 GO:0006355
Cpe13g00466 479 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 160 475 IPR024097 GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01400 Cpe13g00466 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01393 Cpe-Chr1:8390205 Cpe13g00466 Cpe-Chr13:4893153 1.01E-112 dispersed
Cpe02g00239 Cpe-Chr2:1229324 Cpe13g00466 Cpe-Chr13:4893153 4.20E-55 dispersed
Cpe03g00389 Cpe-Chr3:2096059 Cpe13g00466 Cpe-Chr13:4893153 1.40E-37 dispersed
Cpe04g00116 Cpe-Chr4:1039875 Cpe13g00466 Cpe-Chr13:4893153 6.59E-54 dispersed
Cpe04g01400 Cpe-Chr4:11301856 Cpe13g00466 Cpe-Chr13:4893153 1.75E-34 dispersed
Cpe09g00247 Cpe-Chr9:1420189 Cpe13g00466 Cpe-Chr13:4893153 7.70E-103 dispersed
Cpe12g01104 Cpe-Chr12:9140287 Cpe13g00466 Cpe-Chr13:4893153 7.07E-52 dispersed
Cpe13g00466 Cpe-Chr13:4893153 Cpe17g01125 Cpe-Chr17:8540065 3.44E-53 dispersed
Cpe15g00549 Cpe-Chr15:6338973 Cpe13g00466 Cpe-Chr13:4893153 5.08E-49 dispersed
Cpe01g01893 Cpe-Chr1:16191739 Cpe13g00466 Cpe-Chr13:4893153 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50406 PF00010 HLH 5.70E-06 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00466 - - csv:101216110 756.133