Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00487 ATGCCAGACGTGCAAGCTCTTGTGAATGATTTCGTTATCAAGCTTAAGAAGCGTAAAATTGAGGGATCCTTGGCTACTGCGAAGCATACGGCTGAATTGCTTCGTTCTGTCATTTCTCATCAGCGAATACCCTACACGAATCAGGCGGCTGCTTTGATTGATGCTGTGAAAGCTGTTGGCGAGCAGCTGATTGCTGCGAATCCTGTTGAGCTTGCCGTGGGTAATATTGTGAGGCGTGTTTTGCACATTATTAGAGAGGAGGATCTCTCTCTCACCACAGCTTCTATTGCTGGGTTGAGCTTATCAGCAGTTAGTGATGATGAAGATGACGGTGAAAAAGATGATCACCCGGCCCTCTCAGCCGCTGCTGTTGCAGCTGCTGCAAGAAGCACTTTGCGGCCACCTTCCTTGCAAACTCTTCTCGAGGATGTTCCCAACCAAGCGTCTGTTCATCAAACTTCATCATCTGGAGCTGCTGATAAAAGTTCGAGGAGTCGGAAACTCAAGCATGATGTAATTGAAGCCGTTAACGAGCTTATTCAGGATATTGCAACGTGTCATGAACAGATTGCTGAGCAAGCAGTGGAGCACATTCATCAAAAATATCAGGGTCATCTTCTTGCTAAGGAGTTGGTTACAAGAGGTTTACAGACCACACTTATTACTGATTCTGCAGTTTTTGCCATGATCTCCCGGGTGAACATGGTAATAGTTGGAGCTCATGCTGTCATGGCAAATGGTGGTGTCATGGCACCTGTTGGTTTGAATATGGTGGCCCTTGCAGCTAAAAGGCATGCTGTTCCTTTTGTCGTTCTAGCTGGAAGTCACAAGTTATGCCCGTTATATCCTCACAATCCCGAAGTTCTACTCAATGAACTGAGGTCCCCATCAGAGCTTCTGGACTTCGGTGAATTTTCAGATTGCATGGACTTTGGATCCAAAACTGGTTCTCCTCTTCTCCATGTAGTCAACCCTACATTTGACTATGTGCCACCTTCACTTGTTAGTTTATTTATCACCGACACTGGTGGCCACAACTCATCATACATGTATCGGCTTATTGCTGATTATTATTCAGCTGATGATTTGGTAATTAAAAAAAGGCCTTCTACAGGGAGCTGA 1122 45.37 MPDVQALVNDFVIKLKKRKIEGSLATAKHTAELLRSVISHQRIPYTNQAAALIDAVKAVGEQLIAANPVELAVGNIVRRVLHIIREEDLSLTTASIAGLSLSAVSDDEDDGEKDDHPALSAAAVAAAARSTLRPPSLQTLLEDVPNQASVHQTSSSGAADKSSRSRKLKHDVIEAVNELIQDIATCHEQIAEQAVEHIHQKYQGHLLAKELVTRGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVMAPVGLNMVALAAKRHAVPFVVLAGSHKLCPLYPHNPEVLLNELRSPSELLDFGEFSDCMDFGSKTGSPLLHVVNPTFDYVPPSLVSLFITDTGGHNSSYMYRLIADYYSADDLVIKKRPSTGS 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5035859 5045164 + Cp4.1LG13g06030.1 Cpe13g00487 479685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00487 373 Gene3D - 151 357 IPR042529 -
Cpe13g00487 373 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA 54 200 - -
Cpe13g00487 373 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA 201 365 - -
Cpe13g00487 373 SUPERFAMILY NagB/RpiA/CoA transferase-like 7 362 IPR037171 -
Cpe13g00487 373 PANTHER BNAA01G32370D PROTEIN 54 200 - -
Cpe13g00487 373 PANTHER BNAA01G32370D PROTEIN 201 365 - -
Cpe13g00487 373 Pfam Initiation factor 2 subunit family 19 201 IPR000649 GO:0044237
Cpe13g00487 373 Pfam Initiation factor 2 subunit family 202 345 IPR000649 GO:0044237
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01014 Cpe-Chr4:9048959 Cpe13g00487 Cpe-Chr13:5035859 1.04E-14 dispersed
Cpe13g00487 Cpe-Chr13:5035859 Cpe17g00426 Cpe-Chr17:3191706 1.85E-11 dispersed
Cpe01g01920 Cpe-Chr1:16372713 Cpe13g00487 Cpe-Chr13:5035859 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00487 K03754 - csv:101220366 646.351