Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00488 ATGGCATCTGGAGGTCCTTATTTTGATGATTTGCGGAGCAAACCAGAGGTTATTGATCCTCCCCAGAATGAAGATATGATGGACATCAGGGAAACTGTGGACGATCCAGCTCAAAATGAACTTAAACCGAACGTTGCTGTTTCGAGCAGCGTTCGCGATCTCTTGGAATGCCCGGTGTGTTTGAATGCAATGTACCCTCCAATACATCAGTGTTCAAATGGTCACACACTGTGTTCTGGTTGCAAGCCTCGGGTGCACAATCGCTGCCCGACGTGCAGGCACGAACTTGGGAATATTAGATGTCTTGCATTGGAGAAGGTGGCTGCATCTCTAGAACTTCCGTGTAAATATCAGAGCTATGGTTGCATTGGCATATATCCTTATTACAGCAAGGTCAAACATGAATCCCAATGTGTTTATAGACCTTATAGCTGTCCATATGCTGGATCGGAATGTTCAGTCGTCGGTGATATACCCTATTTGGTGGCTCACCTGAAAGATGATCATAAAGTAGACATGCACAGTGGAAGCACATTCAACCATCGATATGTAAAATCGAACCCTCAAGAAGTTGAAAACGCTACGTGGATGCTAACGGTTTTCAGTTGCTTTGGTCAATACTTTTGCCTGCATTTCGAAGCTTTCCAGCTAGGGATGGCTCCAGTATACATAGCCTTTTTGCGGTTCATGGGGGACGATAACGATGCAAAGAACTACAGCTATAGACTCGAGGTGGGTGGAAATGGGAGGAAGATGGTATGGCAAGGGGTGCCCAGAAGCATCAGGGACAGCCATCGGAAAGTTCGGGACAGTTTCGATGGGCTCATTATCCAACGCAACATGGCTCTTTTCTTCTCTGGTGGCGATCGGAAGGAACTAAAGCTTAGAGTGACTGGTAGAATTTGGAAAGAACAGACATTTCATGCTGCCTTGCTCAGATGTTTCAGAGACAACACTTGGGAAGAACAGGTTAAAACTGGCTTTCATTGGGTACACGAGATGTTATCAGATGATACTCCCAGGCTGCATCCTCTGTCCTAG 1041 46.01 MASGGPYFDDLRSKPEVIDPPQNEDMMDIRETVDDPAQNELKPNVAVSSSVRDLLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCIGIYPYYSKVKHESQCVYRPYSCPYAGSECSVVGDIPYLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNDAKNYSYRLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQTFHAALLRCFRDNTWEEQVKTGFHWVHEMLSDDTPRLHPLS 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5045754 5049118 + Cp4.1LG13g06070.1 Cpe13g00488 479686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00488 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 109 IPR013083 -
Cpe13g00488 346 Pfam Seven in absentia protein family 99 298 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cpe13g00488 346 MobiDBLite consensus disorder prediction 1 25 - -
Cpe13g00488 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 165 IPR013083 -
Cpe13g00488 346 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 166 298 IPR008974 GO:0005515
Cpe13g00488 346 SUPERFAMILY RING/U-box 49 97 - -
Cpe13g00488 346 ProSiteProfiles Zinc finger SIAH-type profile. 110 170 IPR013010 GO:0008270
Cpe13g00488 346 SUPERFAMILY TRAF domain-like 110 302 - -
Cpe13g00488 346 CDD Sina 171 299 - -
Cpe13g00488 346 CDD RING-HC_SIAHs 55 93 - -
Cpe13g00488 346 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 7 305 - -
Cpe13g00488 346 ProSiteProfiles Zinc finger RING-type profile. 57 93 IPR001841 -
Cpe13g00488 346 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 7 305 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01211 Cpe-Chr1:7225520 Cpe13g00488 Cpe-Chr13:5045754 0 dispersed
Cpe02g01468 Cpe-Chr2:12627720 Cpe13g00488 Cpe-Chr13:5045754 8.00E-27 dispersed
Cpe09g00442 Cpe-Chr9:2830330 Cpe13g00488 Cpe-Chr13:5045754 0 dispersed
Cpe13g00488 Cpe-Chr13:5045754 Cpe14g00039 Cpe-Chr14:210301 4.15E-169 dispersed
Cpe01g01997 Cpe-Chr1:17053508 Cpe13g00488 Cpe-Chr13:5045754 1.28E-23 transposed
Cpe01g01921 Cpe-Chr1:16382552 Cpe13g00488 Cpe-Chr13:5045754 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00488 K04506 - csv:101220834 636.336