Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00490 ATGTCAACCCAGCACCAGAATGCGGATTCTAATGCCGTTTCAGGCGCTTCTCTCTTTGATCTCCTGTTTCCAGATTCAGAAATGCCAGGCTGGGACTGCAGTCGAACGCCGTCTGATGCAGAAACACAAAGCTGGAACTGGAAGAAGGATCAAGAGCTCTCTGGACCCCAGAAAAGATTGGAAGATCTCTTGTGTCAGCCTGGTAACAACTTGTGTGCAGATTGCGGATCACCGGATCCAAAATGGGTATCGTTAAATTTGGGAGTGTTTATCTGTATAAAGTGTTCTGGAGTACACAGAAGTCTAGGAGTTCATATCTCTAAGGTTTTCTCAGTGAAACTGGATAATTGGACAGACGAACAAGTCGATACTTTGATAAGCATCGGTGGAAACACAGATGTAAACATGAAGTATGAAGCTTGCATCACCGATGGGCACACAAAACCGAAACCAGATTCCTGTATAGAGGAGCGCCACGACTTTATAAGGAGAAAGTATGAACTGCTGCAATTTTATAACGCCAGCAGTCAAAATTCTAGAAATAACAACTTATTGAATAAAAGCAGTTCATCATGCTCCCTAAGTAACACCCCAGGCAACAATGGTACCAATGAAAAAAGGCCATATGAGAAACAACCTACTAGGTATCGCATTGGGCATGTATTTCGTACCAGCCGGATAATTAGAAGAGATAGTGAGCAGAAGACTTTTGACAAGAGAAGCCCTTCAGTCTCCAGACAAACATCGGCAGGTATGGTTGAATTTGTTGGCTTGGTTAAGGTCAATGTGGTTAGAGGCACAAACCTAGCTGTCCGAGACGTGGTGACCAGCGACCCCTACGTAATTCTCATGTTGGGTCAACAATCAGTGAAGACTCGTGTTATTAAGAGCAACCTTAACCCAGTTTGGAACGAGAGATTAATGTTGTCGATTCCCGAGAATATCCCTCCATTAAAAGTGCTCGTCTATGATAAGGACACATTTTCAACTGATGACTTCATGGGTGAGGCTGAAATCGACATTCAACCGTTGGTCGCTGCGACCAAGGCGTATGAGAAGTCCACAATTGATGAATCAATGCAGCTGGGAAAATGGGTGGCGAGTACCGACAATACCTTGGTAAAAGATGGGGTCATTAACCTTGTAGATGGAAAGGTCAGACAGGATATTTCTCTAAGATTGCAGAATGTGGAGAAAGGTGTCCTTGAGATTGAGCTAGAATGCATTCCTCTCACACAATAG 1242 43.88 MSTQHQNADSNAVSGASLFDLLFPDSEMPGWDCSRTPSDAETQSWNWKKDQELSGPQKRLEDLLCQPGNNLCADCGSPDPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEQVDTLISIGGNTDVNMKYEACITDGHTKPKPDSCIEERHDFIRRKYELLQFYNASSQNSRNNNLLNKSSSSCSLSNTPGNNGTNEKRPYEKQPTRYRIGHVFRTSRIIRRDSEQKTFDKRSPSVSRQTSAGMVEFVGLVKVNVVRGTNLAVRDVVTSDPYVILMLGQQSVKTRVIKSNLNPVWNERLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVAATKAYEKSTIDESMQLGKWVASTDNTLVKDGVINLVDGKVRQDISLRLQNVEKGVLEIELECIPLTQ 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5053254 5063787 + Cp4.1LG13g06010.1 Cpe13g00490 479688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00490 413 SMART arf_gap_3 57 180 IPR001164 GO:0005096
Cpe13g00490 413 ProSiteProfiles ARF GTPase-activating proteins domain profile. 57 179 IPR001164 GO:0005096
Cpe13g00490 413 SUPERFAMILY ArfGap/RecO-like zinc finger 57 172 IPR037278 -
Cpe13g00490 413 CDD ArfGap 60 166 - -
Cpe13g00490 413 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 254 348 IPR035892 -
Cpe13g00490 413 PRINTS HIV Rev interacting protein signature 69 88 IPR001164 GO:0005096
Cpe13g00490 413 PRINTS HIV Rev interacting protein signature 88 105 IPR001164 GO:0005096
Cpe13g00490 413 PRINTS HIV Rev interacting protein signature 109 130 IPR001164 GO:0005096
Cpe13g00490 413 Gene3D Arf GTPase activating protein 38 181 IPR038508 -
Cpe13g00490 413 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 1 413 - -
Cpe13g00490 413 SMART C2_3c 258 353 IPR000008 -
Cpe13g00490 413 Pfam C2 domain 258 348 IPR000008 -
Cpe13g00490 413 MobiDBLite consensus disorder prediction 180 214 - -
Cpe13g00490 413 MobiDBLite consensus disorder prediction 180 207 - -
Cpe13g00490 413 CDD C2_ArfGAP 256 400 - -
Cpe13g00490 413 Pfam Putative GTPase activating protein for Arf 58 173 IPR001164 GO:0005096
Cpe13g00490 413 ProSiteProfiles C2 domain profile. 240 355 IPR000008 -
Cpe13g00490 413 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 413 IPR044518 GO:0005096|GO:0005543
Cpe13g00490 413 Gene3D C2 domain 256 411 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00441 Cpe-Chr9:2825759 Cpe13g00490 Cpe-Chr13:5053254 5.39E-164 dispersed
Cpe09g00726 Cpe-Chr9:6673279 Cpe13g00490 Cpe-Chr13:5053254 2.34E-83 dispersed
Cpe10g00050 Cpe-Chr10:333098 Cpe13g00490 Cpe-Chr13:5053254 9.23E-115 dispersed
Cpe13g00490 Cpe-Chr13:5053254 Cpe19g01173 Cpe-Chr19:7898767 5.67E-122 dispersed
Cpe01g01923 Cpe-Chr1:16392230 Cpe13g00490 Cpe-Chr13:5053254 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00490 K12486 - csv:101215531 652.899