Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe13g00490 | ATGTCAACCCAGCACCAGAATGCGGATTCTAATGCCGTTTCAGGCGCTTCTCTCTTTGATCTCCTGTTTCCAGATTCAGAAATGCCAGGCTGGGACTGCAGTCGAACGCCGTCTGATGCAGAAACACAAAGCTGGAACTGGAAGAAGGATCAAGAGCTCTCTGGACCCCAGAAAAGATTGGAAGATCTCTTGTGTCAGCCTGGTAACAACTTGTGTGCAGATTGCGGATCACCGGATCCAAAATGGGTATCGTTAAATTTGGGAGTGTTTATCTGTATAAAGTGTTCTGGAGTACACAGAAGTCTAGGAGTTCATATCTCTAAGGTTTTCTCAGTGAAACTGGATAATTGGACAGACGAACAAGTCGATACTTTGATAAGCATCGGTGGAAACACAGATGTAAACATGAAGTATGAAGCTTGCATCACCGATGGGCACACAAAACCGAAACCAGATTCCTGTATAGAGGAGCGCCACGACTTTATAAGGAGAAAGTATGAACTGCTGCAATTTTATAACGCCAGCAGTCAAAATTCTAGAAATAACAACTTATTGAATAAAAGCAGTTCATCATGCTCCCTAAGTAACACCCCAGGCAACAATGGTACCAATGAAAAAAGGCCATATGAGAAACAACCTACTAGGTATCGCATTGGGCATGTATTTCGTACCAGCCGGATAATTAGAAGAGATAGTGAGCAGAAGACTTTTGACAAGAGAAGCCCTTCAGTCTCCAGACAAACATCGGCAGGTATGGTTGAATTTGTTGGCTTGGTTAAGGTCAATGTGGTTAGAGGCACAAACCTAGCTGTCCGAGACGTGGTGACCAGCGACCCCTACGTAATTCTCATGTTGGGTCAACAATCAGTGAAGACTCGTGTTATTAAGAGCAACCTTAACCCAGTTTGGAACGAGAGATTAATGTTGTCGATTCCCGAGAATATCCCTCCATTAAAAGTGCTCGTCTATGATAAGGACACATTTTCAACTGATGACTTCATGGGTGAGGCTGAAATCGACATTCAACCGTTGGTCGCTGCGACCAAGGCGTATGAGAAGTCCACAATTGATGAATCAATGCAGCTGGGAAAATGGGTGGCGAGTACCGACAATACCTTGGTAAAAGATGGGGTCATTAACCTTGTAGATGGAAAGGTCAGACAGGATATTTCTCTAAGATTGCAGAATGTGGAGAAAGGTGTCCTTGAGATTGAGCTAGAATGCATTCCTCTCACACAATAG | 1242 | 43.88 | MSTQHQNADSNAVSGASLFDLLFPDSEMPGWDCSRTPSDAETQSWNWKKDQELSGPQKRLEDLLCQPGNNLCADCGSPDPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEQVDTLISIGGNTDVNMKYEACITDGHTKPKPDSCIEERHDFIRRKYELLQFYNASSQNSRNNNLLNKSSSSCSLSNTPGNNGTNEKRPYEKQPTRYRIGHVFRTSRIIRRDSEQKTFDKRSPSVSRQTSAGMVEFVGLVKVNVVRGTNLAVRDVVTSDPYVILMLGQQSVKTRVIKSNLNPVWNERLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVAATKAYEKSTIDESMQLGKWVASTDNTLVKDGVINLVDGKVRQDISLRLQNVEKGVLEIELECIPLTQ | 413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 5053254 | 5063787 | + | Cp4.1LG13g06010.1 | Cpe13g00490 | 479688 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe13g00490 | 413 | SMART | arf_gap_3 | 57 | 180 | IPR001164 | GO:0005096 | |
Cpe13g00490 | 413 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 57 | 179 | IPR001164 | GO:0005096 | |
Cpe13g00490 | 413 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 57 | 172 | IPR037278 | - | |
Cpe13g00490 | 413 | CDD | ArfGap | 60 | 166 | - | - | |
Cpe13g00490 | 413 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 254 | 348 | IPR035892 | - | |
Cpe13g00490 | 413 | PRINTS | HIV Rev interacting protein signature | 69 | 88 | IPR001164 | GO:0005096 | |
Cpe13g00490 | 413 | PRINTS | HIV Rev interacting protein signature | 88 | 105 | IPR001164 | GO:0005096 | |
Cpe13g00490 | 413 | PRINTS | HIV Rev interacting protein signature | 109 | 130 | IPR001164 | GO:0005096 | |
Cpe13g00490 | 413 | Gene3D | Arf GTPase activating protein | 38 | 181 | IPR038508 | - | |
Cpe13g00490 | 413 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED | 1 | 413 | - | - | |
Cpe13g00490 | 413 | SMART | C2_3c | 258 | 353 | IPR000008 | - | |
Cpe13g00490 | 413 | Pfam | C2 domain | 258 | 348 | IPR000008 | - | |
Cpe13g00490 | 413 | MobiDBLite | consensus disorder prediction | 180 | 214 | - | - | |
Cpe13g00490 | 413 | MobiDBLite | consensus disorder prediction | 180 | 207 | - | - | |
Cpe13g00490 | 413 | CDD | C2_ArfGAP | 256 | 400 | - | - | |
Cpe13g00490 | 413 | Pfam | Putative GTPase activating protein for Arf | 58 | 173 | IPR001164 | GO:0005096 | |
Cpe13g00490 | 413 | ProSiteProfiles | C2 domain profile. | 240 | 355 | IPR000008 | - | |
Cpe13g00490 | 413 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 1 | 413 | IPR044518 | GO:0005096|GO:0005543 | |
Cpe13g00490 | 413 | Gene3D | C2 domain | 256 | 411 | IPR035892 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe09g00441 | Cpe-Chr9:2825759 | Cpe13g00490 | Cpe-Chr13:5053254 | 5.39E-164 | dispersed | |
Cpe09g00726 | Cpe-Chr9:6673279 | Cpe13g00490 | Cpe-Chr13:5053254 | 2.34E-83 | dispersed | |
Cpe10g00050 | Cpe-Chr10:333098 | Cpe13g00490 | Cpe-Chr13:5053254 | 9.23E-115 | dispersed | |
Cpe13g00490 | Cpe-Chr13:5053254 | Cpe19g01173 | Cpe-Chr19:7898767 | 5.67E-122 | dispersed | |
Cpe01g01923 | Cpe-Chr1:16392230 | Cpe13g00490 | Cpe-Chr13:5053254 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe13g00490 | K12486 | - | csv:101215531 | 652.899 |