Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00517 ATGTCTGGTTCTGACGGCGTCAACTGCAACAATGGCGCCATTATTGATCTTTCTCAGACTAACAACAATGGCGGTTTGGCCGTCAAAAAACCTCCGTCCAAGGACCGTCACAGCAAGGTCGATGGCCGTGGCCGCCGTATTCGTATGCCGATCATTTGTGCTGCTCGGGTCTTCCAACTTACTCGCGAGTTGGGCCACAAATCTGACGGTCAAACCATCGAGTGGCTTCTCCGTCAAGCGGAGCCTTCGATTATTGCTGCCACTGGCACCGGCACTACTCCGGCTAGCTTCTCCACCATTTCCGCTTCACTCCGCGGTGGTGTGGAGCTTTGCAGCAGCGGCGGCGGCGGCTCCGGAGATGGTGATTCAACCGACCGCGGTTTCTCACCCGGCGTCGCTGTTCGTTCAGCAGCAATCGATGGGAGAAGCGTCGGCGGCGAAAGTGGGAAATTACCTTCCAGGGCATCTGAATTTGCTTGCTTCTTTATCTGGTGGACCGGGAAGTTCCGGCCGAAGAGACAACGACCACCGTTGAAGTCATTTTGCTCTATGAACTCTGCTAATTTCGTTGAAGTTCTTCCGCCATTTCAATGGAAATCCATGGCGGAACTCAGCTCTGATGGCTTTCTGGTTATGCTTCTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGA 690 52.75 MSGSDGVNCNNGAIIDLSQTNNNGGLAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRGGVELCSSGGGGSGDGDSTDRGFSPGVAVRSAAIDGRSVGGESGKLPSRASEFACFFIWWTGKFRPKRQRPPLKSFCSMNSANFVEVLPPFQWKSMAELSSDGFLVMLLFFFFFFFFFFFFFFF 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5277063 5278213 - Cp4.1LG13g05650.1 Cpe13g00517 479715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00517 229 MobiDBLite consensus disorder prediction 20 43 - -
Cpe13g00517 229 PANTHER TRANSCRIPTION FACTOR TCP21-RELATED 1 111 - -
Cpe13g00517 229 ProSiteProfiles TCP domain profile. 33 87 IPR017887 -
Cpe13g00517 229 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 111 IPR005333 GO:0003700
Cpe13g00517 229 Pfam TCP family transcription factor 33 120 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01152 Cpe-Chr1:6847350 Cpe13g00517 Cpe-Chr13:5277063 2.82E-54 dispersed
Cpe13g00517 Cpe-Chr13:5277063 Cpe20g00029 Cpe-Chr20:145294 2.43E-37 dispersed
Cpe13g00517 Cpe-Chr13:5277063 Cpe09g00495 Cpe-Chr9:3289850 4.86E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50411 PF03634 TCP 3.60E-32 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00517 K16221 - twl:120013225 171.785