Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00517 ATGTCTGGTTCTGACGGCGTCAACTGCAACAATGGCGCCATTATTGATCTTTCTCAGACTAACAACAATGGCGGTTTGGCCGTCAAAAAACCTCCGTCCAAGGACCGTCACAGCAAGGTCGATGGCCGTGGCCGCCGTATTCGTATGCCGATCATTTGTGCTGCTCGGGTCTTCCAACTTACTCGCGAGTTGGGCCACAAATCTGACGGTCAAACCATCGAGTGGCTTCTCCGTCAAGCGGAGCCTTCGATTATTGCTGCCACTGGCACCGGCACTACTCCGGCTAGCTTCTCCACCATTTCCGCTTCACTCCGCGGTGGTGTGGAGCTTTGCAGCAGCGGCGGCGGCGGCTCCGGAGATGGTGATTCAACCGACCGCGGTTTCTCACCCGGCGTCGCTGTTCGTTCAGCAGCAATCGATGGGAGAAGCGTCGGCGGCGAAAGTGGGAAATTACCTTCCAGGGCATCTGAATTTGCTTGCTTCTTTATCTGGTGGACCGGGAAGTTCCGGCCGAAGAGACAACGACCACCGTTGAAGTCATTTTGCTCTATGAACTCTGCTAATTTCGTTGAAGTTCTTCCGCCATTTCAATGGAAATCCATGGCGGAACTCAGCTCTGATGGCTTTCTGGTTATGCTTCTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGA 690 52.75 MSGSDGVNCNNGAIIDLSQTNNNGGLAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRGGVELCSSGGGGSGDGDSTDRGFSPGVAVRSAAIDGRSVGGESGKLPSRASEFACFFIWWTGKFRPKRQRPPLKSFCSMNSANFVEVLPPFQWKSMAELSSDGFLVMLLFFFFFFFFFFFFFFF 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5277063 5278213 - Cp4.1LG13g05650.1 Cpe13g00517 479715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00517 229 MobiDBLite consensus disorder prediction 20 43 - -
Cpe13g00517 229 PANTHER TRANSCRIPTION FACTOR TCP21-RELATED 1 111 - -
Cpe13g00517 229 ProSiteProfiles TCP domain profile. 33 87 IPR017887 -
Cpe13g00517 229 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 111 IPR005333 GO:0003700
Cpe13g00517 229 Pfam TCP family transcription factor 33 120 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00517 K16221 TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION) - twl:120013225 171.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01152 Cpe-Chr1:6847350 Cpe13g00517 Cpe-Chr13:5277063 2.82E-54 dispersed
Cpe13g00517 Cpe-Chr13:5277063 Cpe20g00029 Cpe-Chr20:145294 2.43E-37 dispersed
Cpe13g00517 Cpe-Chr13:5277063 Cpe09g00495 Cpe-Chr9:3289850 4.86E-56 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g01152 . 36 250 TCP Transcription Factor Family AT5G23280 62.7 3.3e-64 242.3
Cpe09g00495 . 33 230 TCP Transcription Factor Family AT5G23280 58.0 2.1e-58 223.0
Cpe20g00029 CCT,ECH 35 134 TCP Transcription Factor Family AT3G47620 83.0 2.5e-39 160.6
Cpe04g00477 . 33 276 TCP Transcription Factor Family AT3G27010 55.5 5.1e-54 208.8
Cpe01g01152 . 8 248 TCP Transcription Factor Family AT5G08330 55.2 9.6e-61 230.7
Cpe09g00495 . 10 228 TCP Transcription Factor Family AT5G08330 57.0 8.1e-60 227.6
Cpe13g00517 . 1 103 TCP Transcription Factor Family AT5G08330 82.7 3.0e-38 156.0
Cpe04g01456 CCT,CST 31 177 TCP Transcription Factor Family AT5G60970 56.1 2.0e-38 157.1
Cpe03g00977 . 53 164 TCP Transcription Factor Family AT3G02150 66.4 2.2e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50411 PF03634 TCP 3.60E-32 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00517 Cpe_Chr13 FPKM 6.965278 6.259041 24.590399 21.640989 33.646202 29.176935 30.921421 13.391923 20.338305 21.626251