Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00523 ATGCCCTTTTTGGACTACCAACCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCACCGCCTCCCCACGATCTCGCCGCCGCTGTCCCCGCCTTCGCTGCTTCTCTCCACCGCAAGAAGCGGATGCCGAGACACCGCCGCCGCTCTTCCTCTAATCTCCACTTCTCCTTCCCTTCTTCTTCCGCTCCCCTTCTGCCTCCGCCGCCACGGAAAGCAGCTGAAACTCACCTCCCAGCTTTGGATTCCAAAGAAGGGATTATAATCACCATGGATGACTTGGATGGGTTGCATGTTTGGAGCTTTAAATACAGGTTTTGGCCGAATAACAATAGTAGAATGTACGTACTTGAAAATACTGGGGACTTTGTCAATGCTCATGGCTTACAACTAGGAGATTTCATCATGGTTTATCAAGATTATGAAAACCTCAACTATGTGATTCAAGCAAAAAAGGCTTCCGATCAAGAAATGTATACCGGCATAGGAACCAACGTCGTGATCAATGGCGATATAGTGTTTCATGACTATGATCCTAATAAAGTGGGTAACTCGATATACGTGCCTAGTCCAACGATGGATGTGTCGTCGTTCATCTACGATACTAGTTCTGCGTTTGACAACGATTCAACTTTCGACTTTATGAGTGGATCAGTTACTAACTACTCGAGAATGGGAGGTCTCGAAGGGTTTGGATCGGTCGAGAACTTGTCTCTTGACGAGTTCTACTAA 732 48.5 MPFLDYQPPPPPPPPPPPPPPPPHDLAAAVPAFAASLHRKKRMPRHRRRSSSNLHFSFPSSSAPLLPPPPRKAAETHLPALDSKEGIIITMDDLDGLHVWSFKYRFWPNNNSRMYVLENTGDFVNAHGLQLGDFIMVYQDYENLNYVIQAKKASDQEMYTGIGTNVVINGDIVFHDYDPNKVGNSIYVPSPTMDVSSFIYDTSSAFDNDSTFDFMSGSVTNYSRMGGLEGFGSVENLSLDEFY 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5335659 5337220 - Cp4.1LG13g05620.1 Cpe13g00523 479721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00523 243 Pfam B3 DNA binding domain 70 150 IPR003340 GO:0003677
Cpe13g00523 243 SMART B3_2 61 154 IPR003340 GO:0003677
Cpe13g00523 243 SUPERFAMILY Formin homology 2 domain (FH2 domain) 12 19 - -
Cpe13g00523 243 CDD B3_DNA 71 152 IPR003340 GO:0003677
Cpe13g00523 243 MobiDBLite consensus disorder prediction 1 75 - -
Cpe13g00523 243 MobiDBLite consensus disorder prediction 1 27 - -
Cpe13g00523 243 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 70 243 IPR044800 GO:0003700
Cpe13g00523 243 MobiDBLite consensus disorder prediction 38 52 - -
Cpe13g00523 243 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 70 243 - -
Cpe13g00523 243 SUPERFAMILY DNA-binding pseudobarrel domain 70 148 IPR015300 -
Cpe13g00523 243 Gene3D - 69 162 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g01066 Cpe-Chr12:8893190 Cpe13g00523 Cpe-Chr13:5335659 1.54E-26 dispersed
Cpe13g00523 Cpe-Chr13:5335659 Cpe17g00978 Cpe-Chr17:7463183 3.01E-28 dispersed
Cpe01g01959 Cpe-Chr1:16714403 Cpe13g00523 Cpe-Chr13:5335659 9.18E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50413 PF02362 B3 7.00E-11 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00523 - - cmo:103504182 295.049