Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe13g00523 | ATGCCCTTTTTGGACTACCAACCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCACCGCCTCCCCACGATCTCGCCGCCGCTGTCCCCGCCTTCGCTGCTTCTCTCCACCGCAAGAAGCGGATGCCGAGACACCGCCGCCGCTCTTCCTCTAATCTCCACTTCTCCTTCCCTTCTTCTTCCGCTCCCCTTCTGCCTCCGCCGCCACGGAAAGCAGCTGAAACTCACCTCCCAGCTTTGGATTCCAAAGAAGGGATTATAATCACCATGGATGACTTGGATGGGTTGCATGTTTGGAGCTTTAAATACAGGTTTTGGCCGAATAACAATAGTAGAATGTACGTACTTGAAAATACTGGGGACTTTGTCAATGCTCATGGCTTACAACTAGGAGATTTCATCATGGTTTATCAAGATTATGAAAACCTCAACTATGTGATTCAAGCAAAAAAGGCTTCCGATCAAGAAATGTATACCGGCATAGGAACCAACGTCGTGATCAATGGCGATATAGTGTTTCATGACTATGATCCTAATAAAGTGGGTAACTCGATATACGTGCCTAGTCCAACGATGGATGTGTCGTCGTTCATCTACGATACTAGTTCTGCGTTTGACAACGATTCAACTTTCGACTTTATGAGTGGATCAGTTACTAACTACTCGAGAATGGGAGGTCTCGAAGGGTTTGGATCGGTCGAGAACTTGTCTCTTGACGAGTTCTACTAA | 732 | 48.5 | MPFLDYQPPPPPPPPPPPPPPPPHDLAAAVPAFAASLHRKKRMPRHRRRSSSNLHFSFPSSSAPLLPPPPRKAAETHLPALDSKEGIIITMDDLDGLHVWSFKYRFWPNNNSRMYVLENTGDFVNAHGLQLGDFIMVYQDYENLNYVIQAKKASDQEMYTGIGTNVVINGDIVFHDYDPNKVGNSIYVPSPTMDVSSFIYDTSSAFDNDSTFDFMSGSVTNYSRMGGLEGFGSVENLSLDEFY | 243 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 5335659 | 5337220 | - | Cp4.1LG13g05620.1 | Cpe13g00523 | 479721 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe13g00523 | 243 | Pfam | B3 DNA binding domain | 70 | 150 | IPR003340 | GO:0003677 | |
Cpe13g00523 | 243 | SMART | B3_2 | 61 | 154 | IPR003340 | GO:0003677 | |
Cpe13g00523 | 243 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 12 | 19 | - | - | |
Cpe13g00523 | 243 | CDD | B3_DNA | 71 | 152 | IPR003340 | GO:0003677 | |
Cpe13g00523 | 243 | MobiDBLite | consensus disorder prediction | 1 | 75 | - | - | |
Cpe13g00523 | 243 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Cpe13g00523 | 243 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 70 | 243 | IPR044800 | GO:0003700 | |
Cpe13g00523 | 243 | MobiDBLite | consensus disorder prediction | 38 | 52 | - | - | |
Cpe13g00523 | 243 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 | 70 | 243 | - | - | |
Cpe13g00523 | 243 | SUPERFAMILY | DNA-binding pseudobarrel domain | 70 | 148 | IPR015300 | - | |
Cpe13g00523 | 243 | Gene3D | - | 69 | 162 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe12g01066 | Cpe-Chr12:8893190 | Cpe13g00523 | Cpe-Chr13:5335659 | 1.54E-26 | dispersed | |
Cpe13g00523 | Cpe-Chr13:5335659 | Cpe17g00978 | Cpe-Chr17:7463183 | 3.01E-28 | dispersed | |
Cpe01g01959 | Cpe-Chr1:16714403 | Cpe13g00523 | Cpe-Chr13:5335659 | 9.18E-102 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50413 | PF02362 | B3 | 7.00E-11 | CL0405 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe13g00523 | - | - | cmo:103504182 | 295.049 |