Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00526 TATTGGGGAAAGCTTGATATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGACGATCTTTATTGGGGAAAGCTTGATATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTGCTGGGACTCGGGTTGTTTACTTCCCTCAGGGTCACAGCGAACAGGTTGCTGCGACGACGAACAAAGAAGTTGATGGACACATACCCAATTACCCGAACCTACCTCCCCAGTTGATATGTCAACTTCACAATGTTACAATGCATGCAGATGTGGAAACGGATGAAGTGTATGCCCAGATGACATTACAGCCGCTGACTGCACAAGAGCAAAAGGATACATTTCTACCCATGGAATTGGGGATTCCGAGTAGACAGCCAACAAATTACTTTTGCAAGACGTTGACAGCGAGTGATACAAGCACCCATGGAGGTTTCTCTGTACCTCGTCGTGCTGCTGAGAAAGTTTTTCCTCCACTGGATTTTTCACAACAGCCACCAGCACAAGAGCTGATTGCAAGGGACCTTCATGATGTCGAATGGAAGAATGAAAAAAATCAGCTTCTTTTGGGAATACGTCGTGCCACAAGACCACAGACTGTGATGCCCTCTTCTGTTTTATCAAGTGATAGCATGCACATTGGACTCCTGGCTGCTGCAGCTCATGCTGCTGCAACTAATAGCTGTTTCACAGTGTTCTACAACCCCAGGGCTAGCCCATCAGAGTTTGTCATCCCTCTGACAAAGTATGTTAAAGCTGTATTTCATACCCGTGTTTCAGTAGGAATGCGTTTTCGGATGCTTTTTGAAACTGAAGAGTCAAGCGTTCGAAGGTACATGGGTACTATAACTGGAATAAGTGATCTTGACCCTGTTCGTTGGCCGAATTCTCATTGGCGTTCTGTCAAGGTAGGGTGGGACGAGTCAGCAGCTGGCGAGAGGCAGCCAAGGGTATCGTTGTGGGAAATTGAGCCTTTAACTACATTTCCTATGTATCCGTCTCTTTTTCCACTTAGGTTGAAACGTCCATGGCATCCTGGAGTCTCCTCTGTTCATGATAACAGAGATGATGCTTCTAATGGCTTAATGTGGCTTCGGGGAGGAGTCGGGGATCAAGGTCTACACTCACTGAATTTGCAATCCATGGGCTCACTGCCGTGGTTGCAGCAGAGACTCGATTCTCCCATGTTTGGAAATGATCATAATCAGCAGTATCAAGCCATGTTAGCTGCTGGAATGCCGAACCTTGGAGGCGTTGATATGCTGAGACAGCAAATTATGCATCTTCAACAACCTTTCCAATATATTCAACAGGCAGGCTTCCATAACTCTCTATTGCAGCAGCAACAGCAATTGGTTCAACAATCTATGCCTCAGAACATCCTTCAGACACCAAGCCAAGTTATGGCAGAGAATATACCCCAACACATTCTCCAGCAAACTCCACAAAATCAATCAGAGGATATTCCAAACCAGCAGCAGCGTACTTATCATGATACCCTTCAGGTTCAAAGCAATCAATTTCATCAGGGTGAAAATTCAAATGTGCCATCACCCCCATTTCCCAGGACAGAGCTTATGGATTCCAACACAAATTACTCCGAATCCATGATCTCTAGAAGAAATATACTTGCTTCATCGTGTGCTGAAGGGACGGGAAATCTTTCGAATATCTATAGAAGTGGGCAGTCGATCCTAACTGAGCAGTTACCTCAACAATCTCCTGTTTCTAAGAATGCTCATCCACAGGTTGATGCTCACTCGAACTCGATGACATTTCCTCCACCATTTTCTGGTAGAGACTCGATTTTGGAGCTGGGAAATTGTAATTCAGATTCTCCAAGTCGTACACTTTTTGGTGTAAATATTGATTCATCTGGACTTCTACTTCCCTCTAATGTGCCCACTTATGCTTCTCCATCAATTGGTCCTGATTCATCCTCAATGCCAATGGGAGATTCTGGATTTCAAAATTCTATGTACAGTTGTGTCCAAGACTCTTCTGAGTTGTTGCACAGCTCGGGGCAAGTTGATCCATTGAATCCAACTCGGACATTTGTGAAGGTTTACAAATCCGGATCTGTTGGGCGTTCACTAGACATCTCCCGGTTCAGCAGCTATCAGGAGCTGCGAGAGGAGCTGGCTCAGATGTTTGGGATCGAGGGACAGTTGGTAGACCCTCATAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGACGTACTTCTCCTTGGAGATGACCCTTGGGAGGCATTTGTGAATAATGTCTGGTATATCAAGATACTCTCTCCCCAGGACTTTCAGAAACTAGGGGTTCAGGCAATTGAGTCCTTCAACCCCGTCGGTGGTCAGCGACTTACCAGTGGTGGCAATGAAGCTGAAAATGTTTCAGGGCTTCCGTCTGTCGGTAGAAATTCGAGTATATGA 2511 45.96 YWGKLDMKLSTSGFGQQDHEDDLYWGKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNKEVDGHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKDTFLPMELGIPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESAAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGVSSVHDNRDDASNGLMWLRGGVGDQGLHSLNLQSMGSLPWLQQRLDSPMFGNDHNQQYQAMLAAGMPNLGGVDMLRQQIMHLQQPFQYIQQAGFHNSLLQQQQQLVQQSMPQNILQTPSQVMAENIPQHILQQTPQNQSEDIPNQQQRTYHDTLQVQSNQFHQGENSNVPSPPFPRTELMDSNTNYSESMISRRNILASSCAEGTGNLSNIYRSGQSILTEQLPQQSPVSKNAHPQVDAHSNSMTFPPPFSGRDSILELGNCNSDSPSRTLFGVNIDSSGLLLPSNVPTYASPSIGPDSSSMPMGDSGFQNSMYSCVQDSSELLHSSGQVDPLNPTRTFVKVYKSGSVGRSLDISRFSSYQELREELAQMFGIEGQLVDPHRSGWQLVFVDRENDVLLLGDDPWEAFVNNVWYIKILSPQDFQKLGVQAIESFNPVGGQRLTSGGNEAENVSGLPSVGRNSSI 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5354326 5374176 - Cp4.1LG13g05520.1 Cpe13g00526 479724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00526 836 MobiDBLite consensus disorder prediction 596 625 - -
Cpe13g00526 836 ProSiteProfiles PB1 domain profile. 710 795 IPR000270 GO:0005515
Cpe13g00526 836 Gene3D - 706 799 - -
Cpe13g00526 836 Gene3D - 284 356 - -
Cpe13g00526 836 MobiDBLite consensus disorder prediction 814 836 - -
Cpe13g00526 836 Pfam AUX/IAA family 707 794 IPR033389 -
Cpe13g00526 836 MobiDBLite consensus disorder prediction 596 622 - -
Cpe13g00526 836 Gene3D - 155 220 IPR015300 -
Cpe13g00526 836 SUPERFAMILY CAD & PB1 domains 703 784 - -
Cpe13g00526 836 SUPERFAMILY DNA-binding pseudobarrel domain 141 249 IPR015300 -
Cpe13g00526 836 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 208 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe13g00526 836 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 209 809 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe13g00526 836 PANTHER AUXIN RESPONSE FACTOR 8 209 809 - -
Cpe13g00526 836 PANTHER AUXIN RESPONSE FACTOR 8 30 208 - -
Cpe13g00526 836 Pfam Auxin response factor 246 329 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00526 Cpe-Chr13:5354326 Cpe20g00545 Cpe-Chr20:3182872 0 dispersed
Cpe01g01963 Cpe-Chr1:16738823 Cpe13g00526 Cpe-Chr13:5354326 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00526 - - csv:101208098 1490.71