Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00535 ATGTCGCCATCTCTTCCACTTCACTTCCTTCTCTTCACACTTGCAGCAGTTCTCACATCTCCAGTCGCCTCTCATTTCTCGTCTGCAACCTCCTCTCCGTCGCCGGAGGTTGCGCCGTCACTTTCTGAGTGGAGATCTGCTCGGGCCACGTACTATGCTGCTGCCGATCCTCGCGATGCGGTTGGTGGAGCTTGTGGATATGGTGATTTAGTGAAGGCAGGTTATGGCATGGCGACGGTGGGGCTCAGTGAGGCGCTGTTTGAACGCGGTATGATCTGTGGAGCTTGCTTTCAGCTTCGGTGTGTGGAGGACCTCCGGTGGTGTATTCCTGGTACCTCTATCATTGTTACTGTTACGAATTTCTGTGCGCCTAATTATGGCTTTACGGCTGAGGGTGGAGGCCATTGTAACCCTCCTAATAAGCATTTTGTGCTCCCTATTGAGGCGTTTGAGAAGATCGCTATCTGGAAGGCGGGAAACATGCCTGTTCAGTATCGGAGGTATGTGTTCAGTGCCTTCTTTCTTCTGGCTTATTTGTTTTTCTTTTAG 549 51.18 MSPSLPLHFLLFTLAAVLTSPVASHFSSATSSPSPEVAPSLSEWRSARATYYAAADPRDAVGGACGYGDLVKAGYGMATVGLSEALFERGMICGACFQLRCVEDLRWCIPGTSIIVTVTNFCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRYVFSAFFLLAYLFFF 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5442608 5443156 - Cp4.1LG13g05540.1 Cpe13g00535 479733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00535 182 Pfam Lytic transglycolase 80 165 IPR009009 -
Cpe13g00535 182 PANTHER EXPANSIN 3 168 - -
Cpe13g00535 182 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576
Cpe13g00535 182 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Cpe13g00535 182 PRINTS Expansin/Lol pI family signature 158 174 IPR007118 GO:0005576
Cpe13g00535 182 PRINTS Expansin/Lol pI family signature 43 58 IPR007118 GO:0005576
Cpe13g00535 182 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 62 167 IPR007112 -
Cpe13g00535 182 PRINTS Expansin signature 74 88 IPR002963 GO:0009664
Cpe13g00535 182 PRINTS Expansin signature 114 124 IPR002963 GO:0009664
Cpe13g00535 182 PRINTS Expansin signature 150 163 IPR002963 GO:0009664
Cpe13g00535 182 PRINTS Expansin signature 101 112 IPR002963 GO:0009664
Cpe13g00535 182 PRINTS Expansin signature 133 150 IPR002963 GO:0009664
Cpe13g00535 182 SMART dpbb_1 79 165 IPR007112 -
Cpe13g00535 182 Gene3D - 28 169 IPR036908 -
Cpe13g00535 182 SUPERFAMILY Barwin-like endoglucanases 43 167 IPR036908 -
Cpe13g00535 182 PANTHER EXPANSIN-A15 3 168 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00535 Cpe-Chr13:5442608 Cpe16g00619 Cpe-Chr16:6736333 4.33E-43 dispersed
Cpe01g01971 Cpe-Chr1:16866034 Cpe13g00535 Cpe-Chr13:5442608 3.32E-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00535 - - mcha:111011784 317.39