Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00539 ATGGTTTTGTCCAAGACTGTTTCTCAGACGGATGTCTCCGTCCACTCTACTTTCGCTTCTCGATATGTGCGAACCTCTCTCCCGAGATTCAAAATGCCGGAGAATTCGATCCCTAAGGACGCTGCGTTTCAGATCATTAATGATGAACTCATGCTCGATGGAAACCCTAGGCTGAATTTGGCATCCTTCGTCACCACTTGGATGGAGCCTGAGTGCGATAAACTCATCATGGCCGCTATTAACAAGAATTACGTTGATATGGATGAGTATCCCGTCACTACAGAGCTTCAGAACCGATGTGTGAACATGATAGCTCACTTGTTCAATGCCCCATTGGGGGAATCTGAGACGGCGGTGGGAGTCGGAACTGTGGGATCGTCGGAGGCCATAATGTTGGCTGGTTTGGCTTTCAAGAGAAAGTGGCAGAACAAAATGAAGGCTGCAGGCAAGCCCTATGACAACCCCAACATCGTCACTGGAGCCAATGTCCAGGTATGCTGGGAGAAATTCGCAAGGTACTTTGAGGTAGAACTGAAGGAAGTGAAATTGAGTGAAGGTTACTACGTGATGGATCCACAGAAAGCTGTGGAGTTGGTTGATGAGAACACCATCTGTGTTGCAGCCATTTTGGGTTCCACTCTCAATGGAGAATTCGAAGATGTAAAGCTCTTAAATGATCTCTTAATCGAGAAGAACAAGGAAACTGGATGGGATACCCCTATTCATGTTGATGCTGCGAGTGGAGGGTTTATTGCCCCATTCATTTACCCTGATCTAGAATGGGATTTTAGGCTGCCCCTTGTTAAGAGTATTAATGTGAGTGGCCATAAGTATGGGCTTGTTTATGCTGGAATTGGTTGGGCTATCTGGAGGAATAAGGAAGACTTGCCTGAAGAACTCATCTTCCATATCAACTATCTTGGAGCTGACCAACCCACTTTCACCCTTAATTTCTCCAAAGGATCTAGCCAAGTTATTGCTCAGTATTATCAAATGATTCGCTTGGGTTATGAGGGATACCAAAACGTGATGGAAAATTGCAGAGAGAACATGTTGGTTCTAAAGGAAGGACTCGAAAAAACGGGTCGTTTCAACATCGTGTCGAAGGACAATGGAGTCCCACTTGTGGCCTTCTCCTTGAAAGATAGCAGTCGTCATACAGAGTTTGAGGTGTCAGAAATGCTGAGGAGATTCGGTTGGATTGTGCCTGCCTACACCATGCCTCCAGATGCACAACACATAACAGTCCTAAGAGTTGTGATCCGAGAAGACTTTTCTCGCACACTTGCGGAGCGTCTAGTGGCAGATATTGAGAAAACGATGCACGAGCTCGACATCCTCCCGTCGAAGGCCGATATCAAGAACACAGTGGCAAAGAAGAGCGAACTCGAGACACAGAGGGAGATCACAACTGTTTGGAGGAAGTTTGTAATGAACAAGAAGAAGACTAATGGAGTATGTTAA 1464 45.9 MVLSKTVSQTDVSVHSTFASRYVRTSLPRFKMPENSIPKDAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGESETAVGVGTVGSSEAIMLAGLAFKRKWQNKMKAAGKPYDNPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQKAVELVDENTICVAAILGSTLNGEFEDVKLLNDLLIEKNKETGWDTPIHVDAASGGFIAPFIYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWAIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQMIRLGYEGYQNVMENCRENMLVLKEGLEKTGRFNIVSKDNGVPLVAFSLKDSSRHTEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVADIEKTMHELDILPSKADIKNTVAKKSELETQREITTVWRKFVMNKKKTNGVC 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5469153 5475628 + Cp4.1LG13g05410.1 Cpe13g00539 479737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00539 487 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cpe13g00539 487 Gene3D - 1 65 - -
Cpe13g00539 487 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Cpe13g00539 487 CDD DOPA_deC_like 59 439 - -
Cpe13g00539 487 Gene3D - 361 448 - -
Cpe13g00539 487 Gene3D - 66 360 IPR015421 GO:0003824
Cpe13g00539 487 PANTHER GLUTAMATE DECARBOXYLASE 1 487 - -
Cpe13g00539 487 PANTHER GLUTAMATE DECARBOXYLASE 1 487 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cpe13g00539 487 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01871 Cpe-Chr1:16063845 Cpe13g00539 Cpe-Chr13:5469153 0 dispersed
Cpe01g01872 Cpe-Chr1:16069850 Cpe13g00539 Cpe-Chr13:5469153 0 dispersed
Cpe01g02112 Cpe-Chr1:17875864 Cpe13g00539 Cpe-Chr13:5469153 1.83E-07 dispersed
Cpe13g00440 Cpe-Chr13:4739919 Cpe13g00539 Cpe-Chr13:5469153 0 dispersed
Cpe13g00539 Cpe-Chr13:5469153 Cpe13g00678 Cpe-Chr13:6365492 7.93E-09 dispersed
Cpe02g01093 Cpe-Chr2:10013672 Cpe13g00539 Cpe-Chr13:5469153 0 transposed
Cpe17g01064 Cpe-Chr17:8051954 Cpe13g00539 Cpe-Chr13:5469153 1.32E-18 transposed
Cpe01g01974 Cpe-Chr1:16888936 Cpe13g00539 Cpe-Chr13:5469153 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00539 K01580 - csv:101216119 933.71