Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00542 ATGGAGCGCCGGAATCCGCTCCGGCTTTGGTTTACGTCAGCGGTTTTTGTTGTTTTGATGCTCTTTCCTGTAGGAGAGGCGGATCTTGCGTCGGATACGGCGGCGCTGGTGGTGCTTCAGAAAGCTATGGGCGTTCTGAGTCGGACTCGCCGTTGGAACCTTTCCGATGAGACTCCATGTTTGTGGTTTGGCGTCACTTGCCGCGGCGGGAGGGTTGCTGAACTGCGGCTTCCTGGCGTTGGACTCGTCGGGCAACTTCCTTTAGGGTTTGGAAATTTGACTCAACTTGAAACCCTATCTCTTCGCTCTAACTTGCTTTCAGGTTCTATTCCATCTGATTTCGCAAACCTCCGCTCCCTCCGGAATCTATACTTGCATCGGAACTCGTTTTCCGGTGAGATTCCTCCGGTTCTGTTCAGTATTAAGAGTCTTGTTCGACTGAATTTGGCGCACAACAAGTTCGTCGGTTCGATTCCTTCTGGATTCGATAATCTCACGAACTTGAAGGTTCTGAACTTGGAAGAGAATCAACTCGATGGATTCATTCCTGATTTCAACCTTCCCAATCTCAAGGCTCTCAATGTTTCTTTCAATCGTCTCAACGGCTCAATCCCTACGCGGTTTTCCGATCAACCAGCCAGCGCCTTCGATGGCAACTCGCTCTGCGGGAAGCCACTGAGCCCTTGCGACGGCGAGGAGAAGAAATTATCCACAGGAGCAATCATCGGAATAGTTATCGGAAGTTTGGTTGCATTCTTGATTATAGTTCTGATTTTAATCTTTCTGTACCGAAAGACGAACAGGACTAATCGGTCAGCTGGTGCTCAGACGACTACCTCCGAGAGATTGTCGTCTGAGGTTGAGAATGCCGGCGGCGGAAGCGGAGCAATTGGGAGTGAGAGGAATTTGGTGTTCTGTGGGAATGGAGAAAGAACGTTTGATTTGGAGGAACTGTTGAAAGCTTCAGCAGAGGTGCTGGGGAAGGGTTCTTTTGGATCAACTTACAAGGCAGCTCTGGATGTAGGGATGACTGTGGCGGTTAAGAGGTTGAGAGATGTCAAAGTTTCAGAGAAGGAATTCAAGGAGAAGATTGAAAGCTTGGGGATGATGAACCATCAGAACTTGGTTTCCATTAATGGTTACTATTATGGCGGAGATGAGAAGCTGCTGCTGTGTGATTATGTCTCCATGGGAAGCTTATCTGTGCATTTACATGGCAACAAAAGTCCGGGCAGAACTCCATTGAAATGGGAAGCAAGGGCGGGCATTGCGCTCGCAGCCGCTCGGGGGATAACATATCTACATTCTCGACGACCTCCGACCTCCCATGGCAATATAAAGTCTTCAAACATTCTCCTCAATCGATCCCGGACAGCTTGTGTTTCCGACTTCGGCCTCATTCAAATTGCGACACCACACCCGGATAGTCGTCCATCGATGGCGAAGGTGACGAGTCGAATCGATGAAATATATCATTCGATCTTACTGAAAGAACAAGACACGAGCAACGATAAGTTTTATGACGTGGATAGTACTGTTTCTCAGCAATTTTACTCGGCTGATTCAATCATGGTTCCACCTTCAATCTAG 1590 48.43 MERRNPLRLWFTSAVFVVLMLFPVGEADLASDTAALVVLQKAMGVLSRTRRWNLSDETPCLWFGVTCRGGRVAELRLPGVGLVGQLPLGFGNLTQLETLSLRSNLLSGSIPSDFANLRSLRNLYLHRNSFSGEIPPVLFSIKSLVRLNLAHNKFVGSIPSGFDNLTNLKVLNLEENQLDGFIPDFNLPNLKALNVSFNRLNGSIPTRFSDQPASAFDGNSLCGKPLSPCDGEEKKLSTGAIIGIVIGSLVAFLIIVLILIFLYRKTNRTNRSAGAQTTTSERLSSEVENAGGGSGAIGSERNLVFCGNGERTFDLEELLKASAEVLGKGSFGSTYKAALDVGMTVAVKRLRDVKVSEKEFKEKIESLGMMNHQNLVSINGYYYGGDEKLLLCDYVSMGSLSVHLHGNKSPGRTPLKWEARAGIALAAARGITYLHSRRPPTSHGNIKSSNILLNRSRTACVSDFGLIQIATPHPDSRPSMAKVTSRIDEIYHSILLKEQDTSNDKFYDVDSTVSQQFYSADSIMVPPSI 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5489423 5492579 + Cp4.1LG13g05450.1 Cpe13g00542 479740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00542 529 SMART LRR_typ_2 93 116 IPR003591 -
Cpe13g00542 529 SMART LRR_typ_2 117 141 IPR003591 -
Cpe13g00542 529 SMART LRR_typ_2 165 186 IPR003591 -
Cpe13g00542 529 SMART LRR_typ_2 187 210 IPR003591 -
Cpe13g00542 529 Pfam Protein tyrosine and serine/threonine kinase 324 470 IPR001245 GO:0004672|GO:0006468
Cpe13g00542 529 Gene3D Ribonuclease Inhibitor 186 233 IPR032675 -
Cpe13g00542 529 SUPERFAMILY L domain-like 47 209 - -
Cpe13g00542 529 MobiDBLite consensus disorder prediction 271 287 - -
Cpe13g00542 529 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Cpe13g00542 529 PANTHER LRR RECEPTOR-LIKE KINASE 15 472 - -
Cpe13g00542 529 Gene3D Ribonuclease Inhibitor 31 185 IPR032675 -
Cpe13g00542 529 Pfam Leucine rich repeat 90 129 IPR001611 GO:0005515
Cpe13g00542 529 Pfam Leucine rich repeat 143 200 IPR001611 GO:0005515
Cpe13g00542 529 ProSiteProfiles Protein kinase domain profile. 320 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00542 529 Gene3D Transferase(Phosphotransferase) domain 1 395 486 - -
Cpe13g00542 529 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Cpe13g00542 529 MobiDBLite consensus disorder prediction 271 294 - -
Cpe13g00542 529 Gene3D Phosphorylase Kinase; domain 1 298 394 - -
Cpe13g00542 529 SUPERFAMILY Protein kinase-like (PK-like) 324 476 IPR011009 -
Cpe13g00542 529 PANTHER OS05G0588300 PROTEIN 15 472 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01107 Cpe-Chr9:9549259 Cpe13g00542 Cpe-Chr13:5489423 5.38E-129 dispersed
Cpe13g00542 Cpe-Chr13:5489423 Cpe20g00161 Cpe-Chr20:907565 1.33E-114 dispersed
Cpe01g01976 Cpe-Chr1:16908045 Cpe13g00542 Cpe-Chr13:5489423 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62789 PF07714 PK_Tyr_Ser-Thr 4.60E-22 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00542 - - csv:101206516 683.33