Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00557 ATGAAGAGGGAGCTTGAAGAGGATAGATCTACGGCGGATGCTGGCCGGAGGGTTGTAAAAGGGGAGTGTTCTTCATTGTCCGGTGGGAAACTGAAGATGTGGGAGGAGGAGGAGGAGGAGGAGCAAGACGCTAATGGCGGCGGCGGCGGAGGAATGGATGAGTTGCTTGCTGTTTTGGGATACAAGGTTCGGGCGTCGGACATGGCGGATGTGGCTATGAAGATGGAGCAGTTGGAGATGGTGATGGGAACTGCTCAGGAGGATGGGATTTCTCATCTTGCTTCTGATACTGTTCATTATAATCCTTCTGATCTCTCTGCTTGGGTTCAAAATATGCTTTCTGAATTCAATAATTCCACTAACCCTAACCCCCAATCTTCTCTGTATTCCGATTCTCTCCACCGGATTCAATCCACCACATCGTGTTTGTACGACGACGATTCTGAGTACGATCTGAGCGCCATTCCTGGTGTTGCGCTTCTGCCTCCTAAAGATTCCTCCGCAGAAACCGAAACTCATTCTCGTAAGCGATTGAAAATCGGAGGGGAGAGTTCGGGTCATTTATCACCGTCGCCGTCTTCGTCTTCACCGCCGTTCGTTACCACGGCGGGGATTGTATCTGAACCGTCGCGGCCGGTGGTGGTTGTGGGGGAGGATTCGCAAGAGACTGGGATTCAACTTGTTCACGCTTTATTGGCTTGCGCAGAGGCGGTGCAGCAAGAGAATATGAAGCTCGCTGATGCATTGGTGAAGCATATAGGATTTCTAGCGGCGTCGCAAGCCGGCGCTATGAGAAAAGTCGCGACGTATTTCGCCCAAGCCCTAGCTCGTCGGATATACGGAATCTACTCTCCTCAAGACGGGCTATACTCCTCCTACTCCGATCCCTTACAGATGCACTTTTACGAAACCTGTCCGTATCTGAAATTCGCGCATTTCACTGCCAATCAAGCCATTCTCGAAGCGTTCGCGACGGCGGCGAGAGTTCATGTAATCGATTTTAGTCTCAATCAAGGTATGCAGTGGCCGGCGCTGATGCAAGCGCTCGCATTACGCCCTGGTGGTCCGCCGGCATTTCGATTGACTGGAATCAGCCCACCGCAGCCGGATAACACGGCGGATTCGTTGCAGCAAGTCGGTTGGAAGCTAGCACAAATGGCAGAGGCCATTGGTGTTGAGTTTGAGTTCAATCACATCGTGTGTAGTAATCTGGAGGATCTCGATCCGGCGGCTCTGAAGATTCGGCCGACGGCGGTGGAGGCGGTGGCGGTAAACTCGGTGTTCGATCTACACCGGTTGTTGGCTCGACCTGGAGCGATAGAGAAGGTTCTGGGGTTGATAAAGACGACGCAGCCGAAGATCGTGACGATTGTGGAACAGGAAGCGAACCACAACGGGCCGATTTTCCTGGACCGGTTTACTGAGGCGTTGCATTATTACTCGAACCTGTTTGACTCGCTCGAGGGGTCATCAATCGGGTTCGAACCAGCGAATGAGGACGTGTTATTGTCCGAGGTTTATTTGGGGAGACAGATTTGCAACGTGGTGGCATGTGAAGGAACGGACCGAGTTGAGCGACACGAGTCATTGACTCAGTGGAGAACTCGGATTGAATCAGCCGGGTTTGACCCGGTCCATCTCGGTTCAAACGCGTTCAAGCAGGCTAGTATGCTTTTGGCCCTCTTTGCTGGCGGAGAAGGGTAG 1704 52.58 MKRELEEDRSTADAGRRVVKGECSSLSGGKLKMWEEEEEEEQDANGGGGGGMDELLAVLGYKVRASDMADVAMKMEQLEMVMGTAQEDGISHLASDTVHYNPSDLSAWVQNMLSEFNNSTNPNPQSSLYSDSLHRIQSTTSCLYDDDSEYDLSAIPGVALLPPKDSSAETETHSRKRLKIGGESSGHLSPSPSSSSPPFVTTAGIVSEPSRPVVVVGEDSQETGIQLVHALLACAEAVQQENMKLADALVKHIGFLAASQAGAMRKVATYFAQALARRIYGIYSPQDGLYSSYSDPLQMHFYETCPYLKFAHFTANQAILEAFATAARVHVIDFSLNQGMQWPALMQALALRPGGPPAFRLTGISPPQPDNTADSLQQVGWKLAQMAEAIGVEFEFNHIVCSNLEDLDPAALKIRPTAVEAVAVNSVFDLHRLLARPGAIEKVLGLIKTTQPKIVTIVEQEANHNGPIFLDRFTEALHYYSNLFDSLEGSSIGFEPANEDVLLSEVYLGRQICNVVACEGTDRVERHESLTQWRTRIESAGFDPVHLGSNAFKQASMLLALFAGGEG 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5583519 5585568 + Cp4.1LG13g05240.1 Cpe13g00557 479755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00557 567 MobiDBLite consensus disorder prediction 1 51 - -
Cpe13g00557 567 PANTHER DELLA PROTEIN RGL1 42 567 IPR030006 GO:0003712|GO:0005634
Cpe13g00557 567 SMART DELLA_2 53 126 - -
Cpe13g00557 567 MobiDBLite consensus disorder prediction 186 200 - -
Cpe13g00557 567 Pfam GRAS domain family 227 565 IPR005202 -
Cpe13g00557 567 MobiDBLite consensus disorder prediction 161 200 - -
Cpe13g00557 567 MobiDBLite consensus disorder prediction 1 16 - -
Cpe13g00557 567 MobiDBLite consensus disorder prediction 168 182 - -
Cpe13g00557 567 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 42 567 IPR005202 -
Cpe13g00557 567 ProSiteProfiles GRAS family profile. 218 567 IPR005202 -
Cpe13g00557 567 Pfam Transcriptional regulator DELLA protein N terminal 53 120 IPR021914 -
Cpe13g00557 567 Gene3D - 51 116 IPR038088 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00364 Cpe-Chr13:3951163 Cpe13g00557 Cpe-Chr13:5583519 0 dispersed
Cpe13g00557 Cpe-Chr13:5583519 Cpe18g00461 Cpe-Chr18:5581445 3.44E-133 dispersed
Cpe01g01990 Cpe-Chr1:17007575 Cpe13g00557 Cpe-Chr13:5583519 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50417 PF03514 GRAS 7.80E-120 CL0063 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00557 K14494 - csv:101213911 937.176