Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00570 ATGGATTCGAATGAGGAGGAATATAATGTGGAGACGGTTCGCGAACGGATCGCGTCGTCGCGAGCGAGCCGACTGGACCTGGTTCAGAAAGAGCTGAGTATGCAATCGGGTCGCAGAAGATTTAGCCGCGAAAATATCATCAATGGCATTAAAGGCCTCATTATCCACCCTGACAGCAGGTGGTATAGGGCGTGGACGAAGTTCATACTGATATGGGCAGTGTATTCTTCCTTCTTCACACCCATGGAGTTCGCGTTCTTCAGGGGATTACCAGATAATCTATTTATACTTGACATTGTTGGACAGATTGCTTTCCTGGTTGACATTGTTTTCCAGTTCTTCCTTGCCTACAGAGACAGTCAGACATACCTAATGGTCTATAGGCGCACTCCAATAGCACTCAAGTACTTGAAGTCCACTTTTGTGACTGATTTTCTCAGCTGTATGCCCTGGGACCTCATTTATAAGGCTTGTGGGAAGAGAGAGGAGTTGAGATGCCTTCTATGGACAAGGCTATTTCGGGTGCGGAAAGTCACCGATTTTTTTCAGAGGATGGAGAAGGATATACGTATTAATTATATGTTTACTAGAATTGTGAAGCTCATTGTTGTTGAACTTTACTGCACACATACTGCGGCCTGCATCTTTTACTATTTGGCAACCACTCTTCCTCCTACCGAAGAAGGGTACACATGGATCGGAAGCTTAAAATTGGGGGACTACAGTTACTCACATTTCAGGGATATTGATCTATGGAAACGATACACCACATCTTTATACTTTGCTATTGTCACCATGGCCACTGTTGGTTATGGTGATATACATGCAGTCAACCTGAGGGAAATGATATTCGTTATGATTTATGTATCATTTGACATGGTTCTTGGTGCTTACTTGATTGGTAACATGACTGCGTTGATTGTAAAAGGGTCTAAGACGGTGAAATTCAGGGATAAAATGACAGATATAATGAAATACATGAACAGAAATAGACTTAGCAGGGACATCCGTGATCAGATCAAAGGTCACTTACGTTTACAGTATGAAAGTAGCTATACTGAAGCTTCTGTTCTACAGGACATCCCAATATCGATCCGTGCTAAGATTTCCCAAACATTATACTTGTCTTGCATTCAGAATGTCGCTATCTTTAAAGGATGCTCTCCAGAGTTCATCAACCAAATAGTTATTAGACTGCATGAAGAGTTCTTTCTGCCTGGAGAGGTGATAATGGAACCAGGAAATGTGGTCGATCAACTTTATTTTGTCTCTCATGGTGTGCTGGAGGAAGTGGGCATAGCACAAGATGGTTCAGAAGAAACCATAGATTTACTAGAACCCAACAGCTCTTTTGGAGAGATTTCAATTCTTTGCAATATTCCTCAACCCTATACAGTTCGAGTGTGTGAATTATGTAGACTACTGCGCCTTGACAAGCAGTCCTTCACAAATATCCTTGACATATACTTCTACGACGGCAGGAAAATCTTGAACAATCTTCTTGAGGGAAGAGAAACGAGCCTCCGAATTAAGCAAATGGAATCAGATATCACATTTCATATTGGTAAGCAAGAAGCTGAACTTGCTCTCAAGGTGAACAGTGCCGCATATCATGGAGATCTGTACCAATTGAAAGGTCTGGTTCGAGCTGGAGCTGATCCAAACAAGACAGATTATGATGGAAGGTCGCCTTTGCATCTTGCAGCATCCAGAGCATTCGATGATATAGTAGTTTTCCTAATTCAGGAAGGAGTAGACGTTGATCTTACAGATAATTTTGGCAATACACCATTGATGGAAGCCATCAAGAATGGGAACGATCATGTTGCTGAGTTGCTTTCTAAAGAAGGTGCTTCATTGAAGGTTGAGAATGCTGGTAGCTTCCTCTGTGCTGCAGTATCAAGGGGTGATGCAGATCTTATTAAGAGATTATTGCTCTATGGCATTGACCCCAACACCAAAGATTACGATTTCAGAACTCCGCTACATATAGCTGCCTCTTCTGGGCTAACTTTGATGGCAAAATGGGGAAACACCCCGCTTGATGAAGCCCGTATTTGTGGAAACAAGAATTTGGTTAAGCTGTTCGAAGAGGCAAAAGATTCTCAGTTATTAGAATCCTCTTATTCCTCTAAAAAATTCTCAGACAGAAAATACTCGAAGAAATGTACAGTGTTCCCCTTCCACCCATGGGATCCTGAAGAAAATAGAAAGCCTGGAATCGTCCTATGGGTTCCATACACCATTGAAGAGCTCATCAAAGTATCATCAGATCAGCTTCTAGTTTCAGGTGAATGCTGTATATTATCAGAAGATGGAGGTAAAATTCTTGATATCCATATGGTTGATGAAGGTCAAAAGCTGTATCTAGTTCCTGAAACTCGTTAA 2388 41.75 MDSNEEEYNVETVRERIASSRASRLDLVQKELSMQSGRRRFSRENIINGIKGLIIHPDSRWYRAWTKFILIWAVYSSFFTPMEFAFFRGLPDNLFILDIVGQIAFLVDIVFQFFLAYRDSQTYLMVYRRTPIALKYLKSTFVTDFLSCMPWDLIYKACGKREELRCLLWTRLFRVRKVTDFFQRMEKDIRINYMFTRIVKLIVVELYCTHTAACIFYYLATTLPPTEEGYTWIGSLKLGDYSYSHFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFVMIYVSFDMVLGAYLIGNMTALIVKGSKTVKFRDKMTDIMKYMNRNRLSRDIRDQIKGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLSCIQNVAIFKGCSPEFINQIVIRLHEEFFLPGEVIMEPGNVVDQLYFVSHGVLEEVGIAQDGSEETIDLLEPNSSFGEISILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFYDGRKILNNLLEGRETSLRIKQMESDITFHIGKQEAELALKVNSAAYHGDLYQLKGLVRAGADPNKTDYDGRSPLHLAASRAFDDIVVFLIQEGVDVDLTDNFGNTPLMEAIKNGNDHVAELLSKEGASLKVENAGSFLCAAVSRGDADLIKRLLLYGIDPNTKDYDFRTPLHIAASSGLTLMAKWGNTPLDEARICGNKNLVKLFEEAKDSQLLESSYSSKKFSDRKYSKKCTVFPFHPWDPEENRKPGIVLWVPYTIEELIKVSSDQLLVSGECCILSEDGGKILDIHMVDEGQKLYLVPETR 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5646196 5652406 + Cp4.1LG13g05270.1 Cpe13g00570 479768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00570 795 Pfam KHA, dimerisation domain of potassium ion channel 721 790 IPR021789 -
Cpe13g00570 795 CDD CAP_ED 383 497 IPR000595 -
Cpe13g00570 795 PANTHER POTASSIUM CHANNEL AKT1 3 794 IPR045319 GO:0005249|GO:0006813
Cpe13g00570 795 Pfam Ankyrin repeats (3 copies) 535 622 IPR002110 GO:0005515
Cpe13g00570 795 Pfam Ion transport protein 63 308 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cpe13g00570 795 Gene3D Helix hairpin bin 310 366 - -
Cpe13g00570 795 SUPERFAMILY Voltage-gated potassium channels 56 308 - -
Cpe13g00570 795 Pfam Ankyrin repeats (many copies) 629 669 IPR002110 GO:0005515
Cpe13g00570 795 ProSiteProfiles Ankyrin repeat profile. 593 625 IPR002110 GO:0005515
Cpe13g00570 795 Pfam Cyclic nucleotide-binding domain 403 487 IPR000595 -
Cpe13g00570 795 Gene3D Jelly Rolls 367 506 IPR014710 -
Cpe13g00570 795 ProSiteProfiles cAMP/cGMP binding motif profile. 383 503 IPR000595 -
Cpe13g00570 795 PRINTS EAG/ELK/ERG potassium channel family signature 255 272 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe13g00570 795 PRINTS EAG/ELK/ERG potassium channel family signature 299 308 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe13g00570 795 PRINTS EAG/ELK/ERG potassium channel family signature 207 217 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe13g00570 795 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe13g00570 795 SUPERFAMILY Ankyrin repeat 533 698 IPR036770 -
Cpe13g00570 795 SMART cnmp_10 383 501 IPR000595 -
Cpe13g00570 795 PANTHER POTASSIUM CHANNEL SKOR-LIKE 3 794 - -
Cpe13g00570 795 ProSiteProfiles Ankyrin repeat profile. 624 656 IPR002110 GO:0005515
Cpe13g00570 795 ProSiteProfiles KHA domain profile. 722 795 IPR021789 -
Cpe13g00570 795 ProSiteProfiles Ankyrin repeat profile. 560 592 IPR002110 GO:0005515
Cpe13g00570 795 SMART ANK_2a 593 622 IPR002110 GO:0005515
Cpe13g00570 795 SMART ANK_2a 657 705 IPR002110 GO:0005515
Cpe13g00570 795 SMART ANK_2a 560 589 IPR002110 GO:0005515
Cpe13g00570 795 SMART ANK_2a 624 653 IPR002110 GO:0005515
Cpe13g00570 795 Gene3D - 65 309 - -
Cpe13g00570 795 Gene3D - 521 598 IPR036770 -
Cpe13g00570 795 Gene3D - 599 702 IPR036770 -
Cpe13g00570 795 ProSiteProfiles Ankyrin repeat region circular profile. 593 624 - -
Cpe13g00570 795 SUPERFAMILY cAMP-binding domain-like 311 501 IPR018490 -
Cpe13g00570 795 ProSiteProfiles Ankyrin repeat region circular profile. 560 592 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00669 Cpe-Chr8:4625647 Cpe13g00570 Cpe-Chr13:5646196 0 dispersed
Cpe13g00570 Cpe-Chr13:5646196 Cpe18g00465 Cpe-Chr18:5605324 3.29E-111 dispersed
Cpe01g02003 Cpe-Chr1:17087648 Cpe13g00570 Cpe-Chr13:5646196 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00570 K21867 - csv:101210912 1395.95