Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe13g00570 | ATGGATTCGAATGAGGAGGAATATAATGTGGAGACGGTTCGCGAACGGATCGCGTCGTCGCGAGCGAGCCGACTGGACCTGGTTCAGAAAGAGCTGAGTATGCAATCGGGTCGCAGAAGATTTAGCCGCGAAAATATCATCAATGGCATTAAAGGCCTCATTATCCACCCTGACAGCAGGTGGTATAGGGCGTGGACGAAGTTCATACTGATATGGGCAGTGTATTCTTCCTTCTTCACACCCATGGAGTTCGCGTTCTTCAGGGGATTACCAGATAATCTATTTATACTTGACATTGTTGGACAGATTGCTTTCCTGGTTGACATTGTTTTCCAGTTCTTCCTTGCCTACAGAGACAGTCAGACATACCTAATGGTCTATAGGCGCACTCCAATAGCACTCAAGTACTTGAAGTCCACTTTTGTGACTGATTTTCTCAGCTGTATGCCCTGGGACCTCATTTATAAGGCTTGTGGGAAGAGAGAGGAGTTGAGATGCCTTCTATGGACAAGGCTATTTCGGGTGCGGAAAGTCACCGATTTTTTTCAGAGGATGGAGAAGGATATACGTATTAATTATATGTTTACTAGAATTGTGAAGCTCATTGTTGTTGAACTTTACTGCACACATACTGCGGCCTGCATCTTTTACTATTTGGCAACCACTCTTCCTCCTACCGAAGAAGGGTACACATGGATCGGAAGCTTAAAATTGGGGGACTACAGTTACTCACATTTCAGGGATATTGATCTATGGAAACGATACACCACATCTTTATACTTTGCTATTGTCACCATGGCCACTGTTGGTTATGGTGATATACATGCAGTCAACCTGAGGGAAATGATATTCGTTATGATTTATGTATCATTTGACATGGTTCTTGGTGCTTACTTGATTGGTAACATGACTGCGTTGATTGTAAAAGGGTCTAAGACGGTGAAATTCAGGGATAAAATGACAGATATAATGAAATACATGAACAGAAATAGACTTAGCAGGGACATCCGTGATCAGATCAAAGGTCACTTACGTTTACAGTATGAAAGTAGCTATACTGAAGCTTCTGTTCTACAGGACATCCCAATATCGATCCGTGCTAAGATTTCCCAAACATTATACTTGTCTTGCATTCAGAATGTCGCTATCTTTAAAGGATGCTCTCCAGAGTTCATCAACCAAATAGTTATTAGACTGCATGAAGAGTTCTTTCTGCCTGGAGAGGTGATAATGGAACCAGGAAATGTGGTCGATCAACTTTATTTTGTCTCTCATGGTGTGCTGGAGGAAGTGGGCATAGCACAAGATGGTTCAGAAGAAACCATAGATTTACTAGAACCCAACAGCTCTTTTGGAGAGATTTCAATTCTTTGCAATATTCCTCAACCCTATACAGTTCGAGTGTGTGAATTATGTAGACTACTGCGCCTTGACAAGCAGTCCTTCACAAATATCCTTGACATATACTTCTACGACGGCAGGAAAATCTTGAACAATCTTCTTGAGGGAAGAGAAACGAGCCTCCGAATTAAGCAAATGGAATCAGATATCACATTTCATATTGGTAAGCAAGAAGCTGAACTTGCTCTCAAGGTGAACAGTGCCGCATATCATGGAGATCTGTACCAATTGAAAGGTCTGGTTCGAGCTGGAGCTGATCCAAACAAGACAGATTATGATGGAAGGTCGCCTTTGCATCTTGCAGCATCCAGAGCATTCGATGATATAGTAGTTTTCCTAATTCAGGAAGGAGTAGACGTTGATCTTACAGATAATTTTGGCAATACACCATTGATGGAAGCCATCAAGAATGGGAACGATCATGTTGCTGAGTTGCTTTCTAAAGAAGGTGCTTCATTGAAGGTTGAGAATGCTGGTAGCTTCCTCTGTGCTGCAGTATCAAGGGGTGATGCAGATCTTATTAAGAGATTATTGCTCTATGGCATTGACCCCAACACCAAAGATTACGATTTCAGAACTCCGCTACATATAGCTGCCTCTTCTGGGCTAACTTTGATGGCAAAATGGGGAAACACCCCGCTTGATGAAGCCCGTATTTGTGGAAACAAGAATTTGGTTAAGCTGTTCGAAGAGGCAAAAGATTCTCAGTTATTAGAATCCTCTTATTCCTCTAAAAAATTCTCAGACAGAAAATACTCGAAGAAATGTACAGTGTTCCCCTTCCACCCATGGGATCCTGAAGAAAATAGAAAGCCTGGAATCGTCCTATGGGTTCCATACACCATTGAAGAGCTCATCAAAGTATCATCAGATCAGCTTCTAGTTTCAGGTGAATGCTGTATATTATCAGAAGATGGAGGTAAAATTCTTGATATCCATATGGTTGATGAAGGTCAAAAGCTGTATCTAGTTCCTGAAACTCGTTAA | 2388 | 41.75 | MDSNEEEYNVETVRERIASSRASRLDLVQKELSMQSGRRRFSRENIINGIKGLIIHPDSRWYRAWTKFILIWAVYSSFFTPMEFAFFRGLPDNLFILDIVGQIAFLVDIVFQFFLAYRDSQTYLMVYRRTPIALKYLKSTFVTDFLSCMPWDLIYKACGKREELRCLLWTRLFRVRKVTDFFQRMEKDIRINYMFTRIVKLIVVELYCTHTAACIFYYLATTLPPTEEGYTWIGSLKLGDYSYSHFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFVMIYVSFDMVLGAYLIGNMTALIVKGSKTVKFRDKMTDIMKYMNRNRLSRDIRDQIKGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLSCIQNVAIFKGCSPEFINQIVIRLHEEFFLPGEVIMEPGNVVDQLYFVSHGVLEEVGIAQDGSEETIDLLEPNSSFGEISILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFYDGRKILNNLLEGRETSLRIKQMESDITFHIGKQEAELALKVNSAAYHGDLYQLKGLVRAGADPNKTDYDGRSPLHLAASRAFDDIVVFLIQEGVDVDLTDNFGNTPLMEAIKNGNDHVAELLSKEGASLKVENAGSFLCAAVSRGDADLIKRLLLYGIDPNTKDYDFRTPLHIAASSGLTLMAKWGNTPLDEARICGNKNLVKLFEEAKDSQLLESSYSSKKFSDRKYSKKCTVFPFHPWDPEENRKPGIVLWVPYTIEELIKVSSDQLLVSGECCILSEDGGKILDIHMVDEGQKLYLVPETR | 795 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 5646196 | 5652406 | + | Cp4.1LG13g05270.1 | Cpe13g00570 | 479768 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe13g00570 | 795 | Pfam | KHA, dimerisation domain of potassium ion channel | 721 | 790 | IPR021789 | - | |
Cpe13g00570 | 795 | CDD | CAP_ED | 383 | 497 | IPR000595 | - | |
Cpe13g00570 | 795 | PANTHER | POTASSIUM CHANNEL AKT1 | 3 | 794 | IPR045319 | GO:0005249|GO:0006813 | |
Cpe13g00570 | 795 | Pfam | Ankyrin repeats (3 copies) | 535 | 622 | IPR002110 | GO:0005515 | |
Cpe13g00570 | 795 | Pfam | Ion transport protein | 63 | 308 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
Cpe13g00570 | 795 | Gene3D | Helix hairpin bin | 310 | 366 | - | - | |
Cpe13g00570 | 795 | SUPERFAMILY | Voltage-gated potassium channels | 56 | 308 | - | - | |
Cpe13g00570 | 795 | Pfam | Ankyrin repeats (many copies) | 629 | 669 | IPR002110 | GO:0005515 | |
Cpe13g00570 | 795 | ProSiteProfiles | Ankyrin repeat profile. | 593 | 625 | IPR002110 | GO:0005515 | |
Cpe13g00570 | 795 | Pfam | Cyclic nucleotide-binding domain | 403 | 487 | IPR000595 | - | |
Cpe13g00570 | 795 | Gene3D | Jelly Rolls | 367 | 506 | IPR014710 | - | |
Cpe13g00570 | 795 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 383 | 503 | IPR000595 | - | |
Cpe13g00570 | 795 | PRINTS | EAG/ELK/ERG potassium channel family signature | 255 | 272 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Cpe13g00570 | 795 | PRINTS | EAG/ELK/ERG potassium channel family signature | 299 | 308 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Cpe13g00570 | 795 | PRINTS | EAG/ELK/ERG potassium channel family signature | 207 | 217 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Cpe13g00570 | 795 | PRINTS | EAG/ELK/ERG potassium channel family signature | 98 | 108 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Cpe13g00570 | 795 | SUPERFAMILY | Ankyrin repeat | 533 | 698 | IPR036770 | - | |
Cpe13g00570 | 795 | SMART | cnmp_10 | 383 | 501 | IPR000595 | - | |
Cpe13g00570 | 795 | PANTHER | POTASSIUM CHANNEL SKOR-LIKE | 3 | 794 | - | - | |
Cpe13g00570 | 795 | ProSiteProfiles | Ankyrin repeat profile. | 624 | 656 | IPR002110 | GO:0005515 | |
Cpe13g00570 | 795 | ProSiteProfiles | KHA domain profile. | 722 | 795 | IPR021789 | - | |
Cpe13g00570 | 795 | ProSiteProfiles | Ankyrin repeat profile. | 560 | 592 | IPR002110 | GO:0005515 | |
Cpe13g00570 | 795 | SMART | ANK_2a | 593 | 622 | IPR002110 | GO:0005515 | |
Cpe13g00570 | 795 | SMART | ANK_2a | 657 | 705 | IPR002110 | GO:0005515 | |
Cpe13g00570 | 795 | SMART | ANK_2a | 560 | 589 | IPR002110 | GO:0005515 | |
Cpe13g00570 | 795 | SMART | ANK_2a | 624 | 653 | IPR002110 | GO:0005515 | |
Cpe13g00570 | 795 | Gene3D | - | 65 | 309 | - | - | |
Cpe13g00570 | 795 | Gene3D | - | 521 | 598 | IPR036770 | - | |
Cpe13g00570 | 795 | Gene3D | - | 599 | 702 | IPR036770 | - | |
Cpe13g00570 | 795 | ProSiteProfiles | Ankyrin repeat region circular profile. | 593 | 624 | - | - | |
Cpe13g00570 | 795 | SUPERFAMILY | cAMP-binding domain-like | 311 | 501 | IPR018490 | - | |
Cpe13g00570 | 795 | ProSiteProfiles | Ankyrin repeat region circular profile. | 560 | 592 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe08g00669 | Cpe-Chr8:4625647 | Cpe13g00570 | Cpe-Chr13:5646196 | 0 | dispersed | |
Cpe13g00570 | Cpe-Chr13:5646196 | Cpe18g00465 | Cpe-Chr18:5605324 | 3.29E-111 | dispersed | |
Cpe01g02003 | Cpe-Chr1:17087648 | Cpe13g00570 | Cpe-Chr13:5646196 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe13g00570 | K21867 | - | csv:101210912 | 1395.95 |