Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00585 ATGGCTCATCCTTTCCTCATCTCTACCTTTGTAACCGAAGAGTTGGACCAGGATTTCAGGATTAGGGTTAGGGTTAGGAGTGGAATATGGGGATTTGACTATGGGACGCGCCACGGATGGGTTGAGTTCTGGTTATTGTTGGTGATGACTAGAGACCGATGTCACCTGGGAAAGAAGATGATGGGTAGGGGTGCGGATGGAGGTTGTGGTACTGAGGAGAGGCCTTGTTTAGTGGCACGAGTGCCGAACAGAATAACGTTGGCCCAAACTCAAACACACGAGGAGAAGTTGTCTACTGTGGACATTGATTATTACGCGCAGGCTCAAAAGGCTTTATGTGAGCGTTCGCCATTTGATGTAGCGGAGGAGACTTCAGCTCCTTGTGTGTCTACTTTGCCCAGTAGGTTGGGTAACTTCTTGAGTAGACATACGGGTGGTAAGAAACGGCAGAGGAAATCCAATTCCGGGGCAGACAAGAAGTCTTCTAGACAAGGTGAAAGGTCGCGTGGCTCCAACATTTGGGTTGAGACAGAGGAATATTTTAGAGACTTGACGCTGTCTGATGTAGACACTTTGCGTGCAGCGTCTTCCTTTAGCGGGTTAGTGTCTAGGAAATGTTTTTCAATTCCCTCATCAGGAAATGTCCCAGAAGCAAATGTAGGTGGCAGTGAGAATGTTAGTGGCGAGAATACGGATGGGGCCATTGTTAAAGACGAGGTTGAGGATGATCGTTTGTGTCCGGATGTGGGCATGGTTGAAGCCAGTGGCTCACTTCTGGAGGACAAGGGTTGTTCGAATTTGGATTCTTCTTGCGGCTTAGAATGGCTTTTAGGCTGTAGGAATAAGGTGTCTCTAACTTCGGAGAGGCCTTCGAAGAAGCGGAAGCTTCTAGGTGGTGACGCAGGGTTGGAAAAAGTTCTGGTTGCTTCTTCTTGCGATGGTAACTCATCTTTATGCCACTTTTGCTCCAAGGGCGGTACTAACAAAGGGTTAAACCCGTTAGTTACTTGCAGTCGTTGTCATGTGGTGGTTCACAAGAAGTGCTATGGCATTAGAGAGAAAGTCAATGGATCCTGGTTGTGTTCTTGGTGTAAGCAGAGGGATGAAATTAATGAATCCACGAAACCCTGTTTGCTCTGTCCCAGGCAGGGTGGTGCTCTGAAACCTGTACACAAAAACGTTGACAGTGGAGTTTCTGTTGAATTTTCTCATTTATTTTGTAGTCAGTGGATGCCAGAGGTATATATAGAGGACTTGACGCAGATGGAGCCTCTTATGAATCTGGGAGGCATAAAAGAAACCCGGAAAAAGTTAGTATGTAACATATGCAAAGTCAAGTATGGAGCCTGTCTTCGTTGCAGCCATGGAACCTGCAGAACCTCCTTCCATCCAATTTGTGCAAGGGAGGCTAGAAATAGAATGGAGGTCTGGGCAAAATATGGGTGTGATAATGTTGAGCTTCGTGCTTTCTGTTCAAAGCACTCTGACAGTTGGGATAGGAGTAGCGGCCAATGTCCTTCTGAAGCTGTTAACAGTAGCTCATATGTTGTCAGCCACCTTCCAGTAACATTGTCAATTAACAGGCCACAAAAATTAGTAGGGAGAAGGAACATTGATAACCTTTTACTCTGTAAGGAGGCTTCTGATACGAATTCTGGAAAATTGGATGGTGGGGAATCAGAAAATATAGGATCCACTGATCCCAGTTTGAATGCTGATTGTTTTGATACACACAAGTCTACTGTCCAGGGGGTTGAGGATGTTAACCCACTTGACTCCCTTAAACTTGCATCGATTATGAAAAAGTTGATTGATCAAGGAAAAGTGAACGCTAAAGATGTAGCCTCAGAAATTGGCATACCGCCTGATTTATTATGTGCAAAACTTGCTGCTGGCAACCTTGTCCCCGACTTGAAATCCAAAATTGTCCGATGGCTAAGAAGTCATGCTTATATTGGCACCTTGCAGAGAAATTTGAGAGTCAAACTCAAGTCGGCTGTTGCTAAAGCTGTTGATGGATCTGCTGATCGTTCAGACTCATTGTCAGTACCTGATTCTGATAATTCAGACCTTATTGCTAATAAGATGGTTACACTTAGAAGAAAAACTAAAAGCAATATTAGCCATTTGAAGAGTGACGAAATCAAATCTTCATCTGAAGAAACTTTAGGTGGCCCTTGTCTAGTTATGCAAAGTGATACCTTGGACCAGCAAGCTTGTGAAGAACAAGGTGATTCAAATAAGGAATGCATCCAAGATGCTGGTGAGAAGCATTTAAACGAGCATGATAGTTCTCAAGATACTCCAAGGAATTTGCCAAATGATGTAGAAGGTGATTTCTTGGAGTGTTCTGTTTCTGGCCATAATTCTACAGTAAGTGCAGTTCATGGAAAGGCTGGAGAGACCCCTAATTCTTATTTTCATCCATATGTCCAAGAGAAAATGGCACATATGTTGGATGCAAAGCTTCTAAATTTGTCAGAAGGAGAGATGTCATGGCAAGCATCTTCCAGTGCTGGCGTTTGCTGTGGTCACCAACGCCAGCATTTTGACTGCAATGGCACGAGTTACAAATCTGGTGGATTTAATCCAAAGCAGCTAGTCAATAAAAAAATAGGTGGAATCATAAAGTTGTCTCCAGAAGATGAAATTGAAGGAGAAATTATATTTTATCAGCTCAGATTACTTGCAAATGCAGTTTCAAGAAAGCGGTTCACTGACTATTTAATTTGTAACGTTGTTAAGAGTCTTCCAAAGGAGATTAATGAAGCACGAAGTACTAGATGGGATGCTGTTCTTATTAATCAGTATTTTGGTGAGCTTAGAGAAGCAAAGAAACGGGGTAAGAAAGAGAGAAGGCATAAAGAAGCACAGGCTGTACTAGCTGCTGCAACGGCTGCTGCTGCTGCCTCTTCTAGGATGTCATCATTCAGAAAGGATGTATACGAAGAATCTGCTCATAGAGAGTTGATGCCTCGTGCAAAAGAAACACTTACTAAGGTTGCTCTCCCAAAAACTTCATTAGAGTCGGATTTCTGTAAAGAACATGCTAGATCCTGTGACATCTGCAGGCGGCCAGAGACAATGTTAAAGCCAATTTTAGTCTGCGCAAGCTGCAAGGTTTCAGTACATCTGGATTGCTATCGGACTGTTAAAGAGTCCTCAGGTCCATGGTATTGTGAGTTATGTGAAGAATTGGCAGTATCAAGAGGGTCTGGAACTCCTGTAGTCAATTTTTGGGAGAAATCATATTTTGTTGCAGAATGTGGTCTATGTGGTGGCACCACAGGTGCATTCAGGAAATCATCTGACGGCCAGTGGGTTCATGCCGTATGTGCAGAGTGGGTCTTCGAATCAACTTATAAAAGAGGACAAGCAAATCCTGTGGGAGGAATGTGTAATTATGGTCATTGTCAGACCACTTTTCATCCCTTATGCGCTAGAAGTGCTGGATGTTACATGACTGTAAAGACTTCGGGTGGTAAGTTGCAGCACAGAGCATACTGTGAAAAGCATAGCTCAGAGCAGAGAGCAAAGGCGGAGAACCAAACACATGGAATCGAGGAATTGAATAGAGTCAAGCAAATTAGGGTTGAACTGGAGAGGCTACGCCTACTCTGCGAGAGAATCATCAAGCGTGAGAAGATCAAGAGGGACCTGGTTCTGTGTTCACATGATGTTCTTGCTTTTAAAAGAGACCATGTAGCACGATCCGTACTAGTTCACTCTCCTTTCTTCCTACCTGAAGTTAGTTCTGAATCAGCTACCACATCATTAAAGGGGCACGTGGAAGATTTAAAATCGTGCAGCGAAGCTGTGCAGAGATCAGATGATTTAACTGTCGACAGCACAGTTTCCATCAAGCACTGGAACAAAGTACCGTTGTCTTTGGACACTGAACAAAAGACGGACGACGATAGTTCTACATCTCAGAACCCATTCCCCCAAAAATTTGTAGACAGGGGTCAGTTTGCCGGGAAGCAAATACCTCAGAGATCTTCAACTTCTACATCACGTAATCTTGTAGATGTTAGAGGATTGAGGTTCAAGTCTAGAAAGCATGCCGAGACATTTCAGAAAGAGCTGGTAATGACGTCCGACCAAGCATCAATGAAGAATTCTCTTTTACCTAAGCAGTACCTGTATGTTCCTGCTGATGTCCTCGCCAAGGAGAAACAGGTCAACCAGGAAACAGGTTCTGCCGAGCCACCAAAATGCGACAGAAACAAGCCGCGGGTGTCTGCGACGGTTACCGCGCTCTGCCTCTGCATACGAAACTGCAAGCTCGCGATGGGCTCGATAGACGTCCAATCAACCAATCCTGAAAATGGATCCGACGCCGGCGTTTCTGGTGATGGTCGTCAAAAGCCAGTTTCCGCCGACGGTATGAACCAGACATCTAACGAACCAGAAGGAACGGCGCCCGAGAAGCCTAAAGAATTGGGGCCGACGAAGAAGCGTTTGTCCTCCATGCTTCCTCTTGATGTCGGCACCCGCGTCATGTGCCGCTGGAGGGACGGGAAGTACCATCCCGTTAAGGTTATTGAACGTCGGAAGTTGCAGGGAACTGGTTTTAGTGATTACGAATACTATGTCCATTACACCGAGTTCAATAGGAGACTTGATGAGTGGGTGAAGCTTGATCAACTTGATCTTGATTCAGTTGAGACGGTTGTTGATGAGAAAGTGGAGGACAAGGTAACAGGATTGAAGATGACCCGACACCAGAAGCGGAAGATTGACGAAACCCATGTTGAGGGCCATGAGGAACTCGATGCTGCCAGCTTGAGGGAGCATGAAGAATTTACAAAAGTGAAAAATATTGCAACAATTGAACTTGGAAGATATGAGATTGAAACATGGTATTTCTCCCCCTTTCCACCAGAGTACAACGACACCACCAAGCTTTATTTTTGTGAGTTTTGTCTCAATTTCATGAAGCGCAAAGAACAGCTCCAGAGACATATGAGGAAGTGTGATCTGAAGCATCCTCCTGGTGATGAAATATATCGATGTGGTACTTTGTCAATGTTTGAGGTCGACGGAAAGAAGAACAAGGTTTATGGGCAGAATCTCTGTTACTTGGCGAAGTTATTTCTTGACCACAAGACCCTCTACTATGATGTAGACCTTTTTCTGTTTTATGTCCTGTGTGAGTGTGATGATCGAGGGTGTCACATGGTTGGATATTTTTCAAAGGAAAAGCATTCAGAGGAATCCTATAATCTGGCATGCATTCTCACTCTTCCTCCTTATCAAAGGAAGGCTTATGAACTCTCCAAGAAGGAAGGTAAAGTTGGGACTCCTGAAAGACCTCTTTCTGACCTTGGATTGGTGAGCTACAGAGGGTACTGGACCAGAGTTCTTTTAGACATTTTGAAAAAGCACAAGGCCAATATCTCTATCAAGGAGCTAAGTGACATGACAGCTATCAAAGCCGAAGATATTTTGAACACACTTCAGAGCCTGGAGTTGATTCAATACAGGAAAGGGCAGCATGTTATATGTGCTGACCCCAAGGTGCTGGATCGTCATCTCAAAGCTGCTGGTCGTGGGGGCCTAGAGGTCGATGTTAGCAAATTGATCTGGACTCCATACAGAGAACAGAGAAGAGGATATGAGCAAGTAATTTAA 5634 44.39 MAHPFLISTFVTEELDQDFRIRVRVRSGIWGFDYGTRHGWVEFWLLLVMTRDRCHLGKKMMGRGADGGCGTEERPCLVARVPNRITLAQTQTHEEKLSTVDIDYYAQAQKALCERSPFDVAEETSAPCVSTLPSRLGNFLSRHTGGKKRQRKSNSGADKKSSRQGERSRGSNIWVETEEYFRDLTLSDVDTLRAASSFSGLVSRKCFSIPSSGNVPEANVGGSENVSGENTDGAIVKDEVEDDRLCPDVGMVEASGSLLEDKGCSNLDSSCGLEWLLGCRNKVSLTSERPSKKRKLLGGDAGLEKVLVASSCDGNSSLCHFCSKGGTNKGLNPLVTCSRCHVVVHKKCYGIREKVNGSWLCSWCKQRDEINESTKPCLLCPRQGGALKPVHKNVDSGVSVEFSHLFCSQWMPEVYIEDLTQMEPLMNLGGIKETRKKLVCNICKVKYGACLRCSHGTCRTSFHPICAREARNRMEVWAKYGCDNVELRAFCSKHSDSWDRSSGQCPSEAVNSSSYVVSHLPVTLSINRPQKLVGRRNIDNLLLCKEASDTNSGKLDGGESENIGSTDPSLNADCFDTHKSTVQGVEDVNPLDSLKLASIMKKLIDQGKVNAKDVASEIGIPPDLLCAKLAAGNLVPDLKSKIVRWLRSHAYIGTLQRNLRVKLKSAVAKAVDGSADRSDSLSVPDSDNSDLIANKMVTLRRKTKSNISHLKSDEIKSSSEETLGGPCLVMQSDTLDQQACEEQGDSNKECIQDAGEKHLNEHDSSQDTPRNLPNDVEGDFLECSVSGHNSTVSAVHGKAGETPNSYFHPYVQEKMAHMLDAKLLNLSEGEMSWQASSSAGVCCGHQRQHFDCNGTSYKSGGFNPKQLVNKKIGGIIKLSPEDEIEGEIIFYQLRLLANAVSRKRFTDYLICNVVKSLPKEINEARSTRWDAVLINQYFGELREAKKRGKKERRHKEAQAVLAAATAAAAASSRMSSFRKDVYEESAHRELMPRAKETLTKVALPKTSLESDFCKEHARSCDICRRPETMLKPILVCASCKVSVHLDCYRTVKESSGPWYCELCEELAVSRGSGTPVVNFWEKSYFVAECGLCGGTTGAFRKSSDGQWVHAVCAEWVFESTYKRGQANPVGGMCNYGHCQTTFHPLCARSAGCYMTVKTSGGKLQHRAYCEKHSSEQRAKAENQTHGIEELNRVKQIRVELERLRLLCERIIKREKIKRDLVLCSHDVLAFKRDHVARSVLVHSPFFLPEVSSESATTSLKGHVEDLKSCSEAVQRSDDLTVDSTVSIKHWNKVPLSLDTEQKTDDDSSTSQNPFPQKFVDRGQFAGKQIPQRSSTSTSRNLVDVRGLRFKSRKHAETFQKELVMTSDQASMKNSLLPKQYLYVPADVLAKEKQVNQETGSAEPPKCDRNKPRVSATVTALCLCIRNCKLAMGSIDVQSTNPENGSDAGVSGDGRQKPVSADGMNQTSNEPEGTAPEKPKELGPTKKRLSSMLPLDVGTRVMCRWRDGKYHPVKVIERRKLQGTGFSDYEYYVHYTEFNRRLDEWVKLDQLDLDSVETVVDEKVEDKVTGLKMTRHQKRKIDETHVEGHEELDAASLREHEEFTKVKNIATIELGRYEIETWYFSPFPPEYNDTTKLYFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRCGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEESYNLACILTLPPYQRKAYELSKKEGKVGTPERPLSDLGLVSYRGYWTRVLLDILKKHKANISIKELSDMTAIKAEDILNTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLEVDVSKLIWTPYREQRRGYEQVI 1877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5723550 5749124 - Cp4.1LG13g05040.1 Cpe13g00585 479783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00585 1877 SUPERFAMILY FYVE/PHD zinc finger 311 366 IPR011011 -
Cpe13g00585 1877 SUPERFAMILY Chromo domain-like 1486 1604 IPR016197 -
Cpe13g00585 1877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 497 IPR013083 -
Cpe13g00585 1877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1129 1175 IPR013083 -
Cpe13g00585 1877 ProSitePatterns Zinc finger PHD-type signature. 319 364 IPR019786 -
Cpe13g00585 1877 CDD PHD_SF 1019 1063 - -
Cpe13g00585 1877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 372 IPR013083 -
Cpe13g00585 1877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 999 1070 IPR013083 -
Cpe13g00585 1877 Pfam RNA binding activity-knot of a chromodomain 1494 1552 IPR025995 -
Cpe13g00585 1877 Gene3D - 1604 1660 - -
Cpe13g00585 1877 ProSiteProfiles MYST-type histone acetyltransferase (HAT) domain profile. 1603 1865 IPR002717 GO:0004402|GO:0006355|GO:0016573
Cpe13g00585 1877 MobiDBLite consensus disorder prediction 1298 1317 - -
Cpe13g00585 1877 Pfam PHD-zinc-finger like domain 376 494 - -
Cpe13g00585 1877 PANTHER HISTONE ACETYLTRANSFERASE 1451 1869 - -
Cpe13g00585 1877 SMART chromo_7 1508 1567 IPR000953 -
Cpe13g00585 1877 Pfam PHD-finger 1032 1064 - -
Cpe13g00585 1877 Pfam PHD-finger 332 365 - -
Cpe13g00585 1877 ProSiteProfiles Zinc finger PHD-type profile. 1017 1066 IPR019787 -
Cpe13g00585 1877 ProSiteProfiles Zinc finger PHD-type profile. 316 367 IPR019787 -
Cpe13g00585 1877 Pfam MYST family zinc finger domain 1605 1659 IPR040706 -
Cpe13g00585 1877 ProSitePatterns Zinc finger PHD-type signature. 1020 1063 IPR019786 -
Cpe13g00585 1877 SUPERFAMILY FYVE/PHD zinc finger 1010 1064 IPR011011 -
Cpe13g00585 1877 MobiDBLite consensus disorder prediction 151 166 - -
Cpe13g00585 1877 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1604 1866 IPR016181 -
Cpe13g00585 1877 CDD CBD_MOF_like 1497 1566 - -
Cpe13g00585 1877 PANTHER HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2 1451 1869 - -
Cpe13g00585 1877 Gene3D - 1662 1865 - -
Cpe13g00585 1877 CDD ePHD 1089 1172 - -
Cpe13g00585 1877 MobiDBLite consensus disorder prediction 139 170 - -
Cpe13g00585 1877 MobiDBLite consensus disorder prediction 1435 1490 - -
Cpe13g00585 1877 SMART PHD_3 1019 1064 IPR001965 -
Cpe13g00585 1877 SMART PHD_3 1088 1173 IPR001965 -
Cpe13g00585 1877 SMART PHD_3 439 495 IPR001965 -
Cpe13g00585 1877 SMART PHD_3 318 365 IPR001965 -
Cpe13g00585 1877 Coils Coil 1193 1213 - -
Cpe13g00585 1877 Gene3D - 1773 1853 IPR036388 -
Cpe13g00585 1877 Pfam MOZ/SAS family 1664 1832 IPR002717 GO:0004402|GO:0006355|GO:0016573
Cpe13g00585 1877 Gene3D - 1485 1603 - -
Cpe13g00585 1877 ProSiteProfiles Extended PHD (ePHD) domain profile. 374 495 IPR034732 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00585 Cpe-Chr13:5723550 Cpe17g01004 Cpe-Chr17:7601005 2.76E-09 dispersed
Cpe01g02018 Cpe-Chr1:17174767 Cpe13g00585 Cpe-Chr13:5723550 0 transposed
Cpe01g02016 Cpe-Chr1:17161629 Cpe13g00585 Cpe-Chr13:5723550 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50419 PF01853 MOZ_SAS 4.70E-73 CL0257 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00585 - - bhj:120067860 2317.35