Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00613 ATGGCAGATCAGGTGCCGGCTACTGCTTGCAGAGCTCTGAATTTGTCTTTGTTTGTTGTTTTAGCCTTGATTTTGGCCAATGTAGCTCTTGTTTGCGCTAAATCAACTATAGAGCCATGTTCGAACTCCGATTCTTGCAATGCCCTGCTTGGCTACACTCTCTACACTGACCTCAAGGTTTCTGAAGTCGCTTCGCTCTTTCAAGTCGACCCCATTTTGATACTCACCGCCAACGCCATAGATGTTTCATACCCAGATGTTGAAAATCATATTCTCCCTTCGCAGTTGTTCGTCAAAATCCCCATTTCTTGTTCATGCGTTGATGGGATTCGTAAATCGGTTTCGACTCGGTACAAGACTCGCCCATCTGACACTCTCTCGTCGATTGCTGATTCCATCTATGCTGGTTTGGTCTCGTCCGACCAGATTCGGGAGGCTAATTCCATTTCGGACCCCTCTGTTCTTGATGTTGGACAGACCCTTGTCGTGCCGCTTCCTTGTACTTGCTTTAATGGGACAGACAATTCGTTGCCTGCTATTTACTTGTCTTACGTTGTTCAATCCGATGATACTTTAGCTGGGATTGCGTTCAGATATTCGACCACTATCACTGACTTGATGGATGTTAATGCCATGGGCAACCCAGCGATCAAAGCTGGGGATATTTTGGCTGTCCCCTTGCCAGCGTGTGCCTCCAAGTTTCCTGGATATGCCTCCGACTTCGGTTTGATCGTGCCGAATGGGAGCTACGCCATTACGGCTAGTCATTGTGTTCAATGTAGCTGTGGACCGGGGAACCTCAATATGTACTGCATGCCTGCGCCCTTCGCCGTTTCTTGTTCGAGTATGCAATGTCGAAACAGCAATCTAATGCTTGGGAACTTCACTGCACAGCAGAGTAGTGCAGGTTGCAATGTTACGTCTTGTAGCTATGGCGGGTTTGTTAATGGCACGATATTGACGACGCTGTCTTCGAGTTTACAGCCTCGATGCCCAGCTCCAGCTCCTCAATTTGATGGCTCACCTGCACCGGGGTCGGGATCGGGATCGATCCCATCAACAACTAGTTCTCTCCCTGGACTCCCACCAGCCAGTGGCCCCGTTGGCAGTTCTTCTGGATTGAACCCGACTCCGTCCTCTGCCTCCTCGTTGATGAATCCATTTGCTAGTATTTCTGCTGCCATTCTGTTATTTATCATCGTCAACTTCTTAGCAGGCGTGCCCGCGATGCCTGATGGC 1239 49.23 MADQVPATACRALNLSLFVVLALILANVALVCAKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQVDPILILTANAIDVSYPDVENHILPSQLFVKIPISCSCVDGIRKSVSTRYKTRPSDTLSSIADSIYAGLVSSDQIREANSISDPSVLDVGQTLVVPLPCTCFNGTDNSLPAIYLSYVVQSDDTLAGIAFRYSTTITDLMDVNAMGNPAIKAGDILAVPLPACASKFPGYASDFGLIVPNGSYAITASHCVQCSCGPGNLNMYCMPAPFAVSCSSMQCRNSNLMLGNFTAQQSSAGCNVTSCSYGGFVNGTILTTLSSSLQPRCPAPAPQFDGSPAPGSGSGSIPSTTSSLPGLPPASGPVGSSSGLNPTPSSASSLMNPFASISAAILLFIIVNFLAGVPAMPDG 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5931181 5935611 - Cp4.1LG13g04780.1 Cpe13g00613 479811

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00613 413 Gene3D LysM domain 174 233 IPR036779 -
Cpe13g00613 413 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 19 339 - -
Cpe13g00613 413 Pfam LysM domain 184 226 IPR018392 -
Cpe13g00613 413 Pfam LysM domain 118 164 IPR018392 -
Cpe13g00613 413 SUPERFAMILY LysM domain 182 227 IPR036779 -
Cpe13g00613 413 ProSiteProfiles LysM domain profile. 182 225 IPR018392 -
Cpe13g00613 413 SUPERFAMILY LysM domain 116 165 IPR036779 -
Cpe13g00613 413 MobiDBLite consensus disorder prediction 334 379 - -
Cpe13g00613 413 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 19 339 - -
Cpe13g00613 413 CDD LysM 116 163 IPR018392 -
Cpe13g00613 413 Gene3D LysM domain 112 173 IPR036779 -
Cpe13g00613 413 CDD LysM 183 225 IPR018392 -
Cpe13g00613 413 SMART LysM_2 183 226 IPR018392 -
Cpe13g00613 413 SMART LysM_2 117 164 IPR018392 -
Cpe13g00613 413 ProSiteProfiles LysM domain profile. 116 163 IPR018392 -
Cpe13g00613 413 MobiDBLite consensus disorder prediction 343 361 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00613 - - - csv:101216338 658.292
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00624 Cpe-Chr4:6477046 Cpe13g00613 Cpe-Chr13:5931181 5.44E-34 dispersed
Cpe13g00613 Cpe-Chr13:5931181 Cpe19g00579 Cpe-Chr19:4835778 3.71E-08 dispersed
Cpe01g02046 Cpe-Chr1:17367016 Cpe13g00613 Cpe-Chr13:5931181 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g02046 . 16 392 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 76.0 1.7e-161 566.2
Cpe13g00613 . 17 372 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 69.5 1.9e-144 509.6
Cpe01g02046 . 17 356 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 70.3 1.5e-138 490.0
Cpe13g00613 . 17 334 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 71.7 5.3e-131 464.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007180 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00613 Cpe_Chr13 FPKM 25.656059 26.528759 10.585454 10.401854 21.011103 19.287853 18.447683 0.0 0.0 0.0