Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00617 ATGGATAGAAGAAAATGGCCATGGAAGAAGAAGTCGTCATCTGATAAAAGTCCTGGACAAACCGAAAGTTCTGGATCAATGTCGACGTATTCCGAGAGGTTTTCCGACGAGCAGGAGGCAGCCAAGTTGTCGCCTAATCACGAGATTCAGTCACCAGAAGTAACGTCAAAAGCAGTATGTGATGAAGACATTGATGATGATTCACCAAAACAAGAAGAGATCAATGATAGTGTAAAGGGTCTATCTGATAGGTTATCAGCTGCTCTTTTAAATGTGAAGGCCAAAGAGGATTTGGTCAACCAGCATGCCAAAGTTGCTGAAGAAGCTATCGCAGGATGGGAAAATGCCGAAAATGAAGTTGGACTACTAAAACAGCAGCTTGGGACTACAGTTCAGCAAAAGTCTGCATTGGAGGACCGAGTGAGCCACCTTGATGGGGCCCTCAAAGAATGTGTTAGGCAGCTTAGGCTGGCAAGGGAGGAGCAGGAGCAGAAGATTCGCGACACGGTGGAAGAAAAAACCCGAGATTGGGAGTCCATCAAGGTGAACCTTGAGAGGCAGCTCCTCGAGCTCGAGTGCAAAGCGGATGAGGCTAAATGTGAATCTCCTCAAAATGATCCTAGCCTTGGCAAGATGCTCGAGTCATTGAAAAGGGAGAATGCAGCCCTCAGGTATGAGCTTCATGCTCAATATAGGGAGTTAGAAACCAGGACTATTGAGAGGGATTTGAGTACACAAACAGCTGAAACAGCCAGTAAGCAACATCTTGAGAGCATAAAGAAAATGACGAAGCTTGAGGCCGAGTGTCGCCGGTTAAAAGTAATGTCATACAAACCATCATTGGTTTATGATCACAAATCCATAGCTGCTTCGACGACTATTTCTATCGAGTCACTTACCGACACTCAATCGGATAACGGAGAGCAGCTTAATGGCGTGGATATGGATATAAGAAGAACCGAACGAAACAAATGTGTAGCTAGTTGCTCAGACTCATGGTCATCAAACTTACTTGTTAGCAGTAATCTTCCTTCTTCTCTTGAACTTGATCTCATGGATGATTTTCTTGAGATGGAAAGGCTTGCATCATTACCCGAAACTTCTATAAGAGAGAGTCATCAAGAACCCGAAGCTTCTGCTCGTCCTACTGCTGAAGAAAATGCCATAAGAACCGAGCTCGAGACGTTGCAGCATGAGAGATCTGTAATGGAAGAGAAGCTGGTTGAGATGGAAGAAGCAAAGATTGAATTGGAAGCGAAGCTGAAACAGATAGAAATGGAGAAGGATGAAATGGAAGAGAGGCTAGAGATGATGGAAACGGAGAGAGCTGAAGTCGATGAAATGGTAGCGATGATGGAGAGCGAGATATCCGAATCGGGGCGAAAGTTAGCGACGATGGAAGCAGAGAAAGCTGAAATGAGAGAGAAATTAATGAAGTTGGAGGCAGAGAAAGATGAACTGAGGAGTGCTCTTTCTCAGAGTCAGAACTCTGTTGACATTTCACAATTTCAATTCAAGGAAACTGAAATGAAACTGGAGAAGTTGCAGAATGAGCTAACCTTTGCAAATGAATCAAAGTTAAGAATTGAGTCTCAACTTATCAGCATGGAAGCTGAATCTCTGACCATGAATGCAAAGGAGGATCTAGCTGTAGCTGCAGGGAAACTTGCAGAGTGTCAAAAGACAATTGCTTCTCTTGGGAATCAGCTTAAATCTCTAGCATCCCTCGAAGATTTTCTGATCGATACGACGCAACTACCGGAGTTCACAGATGGCGAGGAGCATTGCAAGCATTCGAACGGGACACTTTCACCCAGAAGAGATTCAGACTATACTAAAGGAGTTGATGACAGTTCTGAACCATCATTGAATAAGAACGAAAACGACTCGCCCCCATTTTCATCTTCTTCAACTTCATCGTCGGTAATTGTAAGTCGTATCGTCAATTCTGAGAAAAACCGAAACGGTTTTGCTAAGTTTTTCTCTCGAACCAAGGGCGGGATAAAACTAGAAATTTAG 2019 43.83 MDRRKWPWKKKSSSDKSPGQTESSGSMSTYSERFSDEQEAAKLSPNHEIQSPEVTSKAVCDEDIDDDSPKQEEINDSVKGLSDRLSAALLNVKAKEDLVNQHAKVAEEAIAGWENAENEVGLLKQQLGTTVQQKSALEDRVSHLDGALKECVRQLRLAREEQEQKIRDTVEEKTRDWESIKVNLERQLLELECKADEAKCESPQNDPSLGKMLESLKRENAALRYELHAQYRELETRTIERDLSTQTAETASKQHLESIKKMTKLEAECRRLKVMSYKPSLVYDHKSIAASTTISIESLTDTQSDNGEQLNGVDMDIRRTERNKCVASCSDSWSSNLLVSSNLPSSLELDLMDDFLEMERLASLPETSIRESHQEPEASARPTAEENAIRTELETLQHERSVMEEKLVEMEEAKIELEAKLKQIEMEKDEMEERLEMMETERAEVDEMVAMMESEISESGRKLATMEAEKAEMREKLMKLEAEKDELRSALSQSQNSVDISQFQFKETEMKLEKLQNELTFANESKLRIESQLISMEAESLTMNAKEDLAVAAGKLAECQKTIASLGNQLKSLASLEDFLIDTTQLPEFTDGEEHCKHSNGTLSPRRDSDYTKGVDDSSEPSLNKNENDSPPFSSSSTSSSVIVSRIVNSEKNRNGFAKFFSRTKGGIKLEI 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5957485 5962872 + Cp4.1LG13g04650.1 Cpe13g00617 479815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00617 672 SUPERFAMILY Tropomyosin 387 574 - -
Cpe13g00617 672 MobiDBLite consensus disorder prediction 624 638 - -
Cpe13g00617 672 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 545 671 - -
Cpe13g00617 672 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 467 - -
Cpe13g00617 672 MobiDBLite consensus disorder prediction 1 16 - -
Cpe13g00617 672 Pfam Filament-like plant protein, long coiled-coil 208 275 IPR008587 -
Cpe13g00617 672 Pfam Filament-like plant protein, long coiled-coil 95 201 IPR008587 -
Cpe13g00617 672 Coils Coil 386 532 - -
Cpe13g00617 672 MobiDBLite consensus disorder prediction 366 380 - -
Cpe13g00617 672 MobiDBLite consensus disorder prediction 17 34 - -
Cpe13g00617 672 MobiDBLite consensus disorder prediction 591 638 - -
Cpe13g00617 672 MobiDBLite consensus disorder prediction 1 78 - -
Cpe13g00617 672 MobiDBLite consensus disorder prediction 591 623 - -
Cpe13g00617 672 Coils Coil 152 172 - -
Cpe13g00617 672 PANTHER FILAMENT-LIKE PLANT PROTEIN 1-RELATED 545 671 - -
Cpe13g00617 672 Coils Coil 213 233 - -
Cpe13g00617 672 PANTHER FILAMENT-LIKE PLANT PROTEIN 1-RELATED 463 539 - -
Cpe13g00617 672 PANTHER FILAMENT-LIKE PLANT PROTEIN 1-RELATED 1 467 - -
Cpe13g00617 672 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 463 539 - -
Cpe13g00617 672 Coils Coil 181 201 - -
Cpe13g00617 672 MobiDBLite consensus disorder prediction 366 386 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00617 - - - csv:101206243 898.271
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00080 Cpe13g00617 CCT
Cpe02g00080 Cpe13g00617 ECH
Cpe06g00076 Cpe13g00617 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00617 Cpe-Chr13:5957485 Cpe16g00123 Cpe-Chr16:2724467 1.78E-31 dispersed
Cpe01g02050 Cpe-Chr1:17392355 Cpe13g00617 Cpe-Chr13:5957485 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1082 Blo01g01590 Blo12g00890 Bda01g00496 Bda03g00283 Bpe02g00358 Bpe04g00239 Bma04g00240 Bma01g02360 . Cmo15g00692 Cma01g01963 Cma09g00113 Car01g01534 . . Cpe06g00076 Cpe13g00617 . . . . . . . Cla08g00588 Cam08g1003 Cec08g0593 Cco08g0702 Clacu08g0712 . Cre08g0523 Cone4ag1962 Cone7ag1876 . . Lsi04g01729 Csa03g04266 Chy04g00430 . . . . . . . . . Sed01g2501 Cmo01g02021 Cmo09g00111 . . . Car09g00102 . Cpe02g00080 Bhi09g02102 Tan01g5000 . . Hepe01g1627 Mch11g0131 . Cla05g01887 Cam05g2020 Cec05g2031 Cco05g2087 Clacu05g2011 Cmu05g1892 Cre05g2017 Lsi08g00434 . . Cme04g00482
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003586 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00617 Cpe_Chr13 FPKM 0.422347 0.0 0.0 0.0 0.0 0.0 0.0 0.595341 0.412768 0.530095