Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00630 ATGTCGGAAGCAATCGCCGTGATGGATATTGACGACGATAATGGCAACAACGAAGATGAAAAGTCAGTCGAGGGCAAAAACGTCGCCAATCCTGCAGACGCACCCGACGGTAAAGCGATACCCTGGGTCGAGAAGTTCCGGCCCAAGTCTCTCGCCGATGTTGCTGCCCACCGCGACATTGTAGACACCATCGACAAGCTGACCAGTGAGAATAGGCTGCCACATCTCCTGTTGTATGGCCCTCCTGGCACTGGCAAGACATCAACCATTCTAGCGGTTGCTCGCAAGCTTTATGGAACAAACTACCACAACATGATACTGGAGCTGAATGCATCAGACGATAGAGGGATCGATGTTGTTAGACAGCAGATTCAAGATTTTGCAAGTACCCAAAGCTTTTCATTTGGGGCAAAAGCATCTGTAAAATTGGTACTATTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTGCGTAGAGTAATTGAGAAATACACAAAAAATACACGGTTTGCTCTTATCTGTAATCATGTCAATAAGATTATTCCAGCGTTACAATCAAGGTGTACCCGTTTTCGATTTGCTCCCCTTGATAACGTTCATGTCACTGAACGACTCAGATATGTTATTGAGGCTGAGAGGTTGGACGTAACTGAGGGTGGCTTAGCTGCCCTTGTTCGACTTTGCACTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACGCATATGGCTTCCCAGCATATTACCGAAGAAGCTGTCTATCTCTGCACAGGAAATCCATTGCCTAAAGACATAGAGCAAATATCCTTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGCGAATATATGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTTGGACGTAACTGAGGGTGGCTTAGCTGCCCTTGTTCGACTTTGCACTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACGCATATGGCTTCCCAGCATATTACCGAAGAAGCTGTCTATCTCTGCACAGGAAATCCATTGCCTAAAGACATAGAGCAAATATCCTTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGCGAATATATGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTTTGTTTTCAAGATCAAGATGCCATCGGATGTCAGAGTTCAGTTGATTAATGATCTGGCTGACATAGAGTACAGGATGAGTTTCGGATGCAATGACAAGTTACAACTCGGATCGCTCATCTCATCTTTTACTCGAGCTAGATCTGCACTTGTCGCTGCTGCACAGTAG 1368 43.93 MSEAIAVMDIDDDNGNNEDEKSVEGKNVANPADAPDGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNVHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALNILQSTHMASQHITEEAVYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEIKTRKGLALVDIVREVTLLDVTEGGLAALVRLCTGDMRKALNILQSTHMASQHITEEAVYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEIKTRKGLALVDIVREVTLFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVAAAQ 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6038030 6047162 + Cp4.1LG13g04660.1 Cpe13g00630 479828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00630 455 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 37 307 - -
Cpe13g00630 455 Gene3D - 310 354 - -
Cpe13g00630 455 Pfam ATPase family associated with various cellular activities (AAA) 76 196 IPR003959 GO:0005524|GO:0016887
Cpe13g00630 455 CDD AAA 60 198 - -
Cpe13g00630 455 Pfam Replication factor C C-terminal domain 356 442 IPR013748 -
Cpe13g00630 455 CDD HLD_clamp_RFC 199 261 - -
Cpe13g00630 455 Gene3D - 356 453 - -
Cpe13g00630 455 CDD HLD_clamp_RFC 309 353 - -
Cpe13g00630 455 PANTHER REPLICATION FACTOR C SUBUNIT 5 309 451 - -
Cpe13g00630 455 Gene3D - 36 198 IPR027417 -
Cpe13g00630 455 Gene3D - 265 309 - -
Cpe13g00630 455 PANTHER REPLICATION FACTOR C SUBUNIT 5 37 307 - -
Cpe13g00630 455 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 309 451 - -
Cpe13g00630 455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 258 IPR027417 -
Cpe13g00630 455 Gene3D - 201 263 - -
Cpe13g00630 455 SUPERFAMILY post-AAA+ oligomerization domain-like 356 446 IPR008921 GO:0003677|GO:0006260
Cpe13g00630 455 SUPERFAMILY post-AAA+ oligomerization domain-like 264 308 IPR008921 GO:0003677|GO:0006260
Cpe13g00630 455 MobiDBLite consensus disorder prediction 1 39 - -
Cpe13g00630 455 SMART AAA_5 72 203 IPR003593 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00548 Cpe-Chr1:3153800 Cpe13g00630 Cpe-Chr13:6038030 2.43E-10 dispersed
Cpe13g00630 Cpe-Chr13:6038030 Cpe14g00652 Cpe-Chr14:4240178 3.39E-10 dispersed
Cpe19g01086 Cpe-Chr19:7379515 Cpe13g00630 Cpe-Chr13:6038030 1.69E-06 dispersed
Cpe08g00457 Cpe-Chr8:2937720 Cpe13g00630 Cpe-Chr13:6038030 7.64E-07 transposed
Cpe14g00835 Cpe-Chr14:6781291 Cpe13g00630 Cpe-Chr13:6038030 4.07E-07 transposed
Cpe19g00815 Cpe-Chr19:6100226 Cpe13g00630 Cpe-Chr13:6038030 2.28E-14 transposed
Cpe01g02062 Cpe-Chr1:17463372 Cpe13g00630 Cpe-Chr13:6038030 6.06E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00630 K10756 - csv:101217230 582.022