Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe13g00630 | ATGTCGGAAGCAATCGCCGTGATGGATATTGACGACGATAATGGCAACAACGAAGATGAAAAGTCAGTCGAGGGCAAAAACGTCGCCAATCCTGCAGACGCACCCGACGGTAAAGCGATACCCTGGGTCGAGAAGTTCCGGCCCAAGTCTCTCGCCGATGTTGCTGCCCACCGCGACATTGTAGACACCATCGACAAGCTGACCAGTGAGAATAGGCTGCCACATCTCCTGTTGTATGGCCCTCCTGGCACTGGCAAGACATCAACCATTCTAGCGGTTGCTCGCAAGCTTTATGGAACAAACTACCACAACATGATACTGGAGCTGAATGCATCAGACGATAGAGGGATCGATGTTGTTAGACAGCAGATTCAAGATTTTGCAAGTACCCAAAGCTTTTCATTTGGGGCAAAAGCATCTGTAAAATTGGTACTATTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTGCGTAGAGTAATTGAGAAATACACAAAAAATACACGGTTTGCTCTTATCTGTAATCATGTCAATAAGATTATTCCAGCGTTACAATCAAGGTGTACCCGTTTTCGATTTGCTCCCCTTGATAACGTTCATGTCACTGAACGACTCAGATATGTTATTGAGGCTGAGAGGTTGGACGTAACTGAGGGTGGCTTAGCTGCCCTTGTTCGACTTTGCACTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACGCATATGGCTTCCCAGCATATTACCGAAGAAGCTGTCTATCTCTGCACAGGAAATCCATTGCCTAAAGACATAGAGCAAATATCCTTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGCGAATATATGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTTGGACGTAACTGAGGGTGGCTTAGCTGCCCTTGTTCGACTTTGCACTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACGCATATGGCTTCCCAGCATATTACCGAAGAAGCTGTCTATCTCTGCACAGGAAATCCATTGCCTAAAGACATAGAGCAAATATCCTTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGCGAATATATGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTTTGTTTTCAAGATCAAGATGCCATCGGATGTCAGAGTTCAGTTGATTAATGATCTGGCTGACATAGAGTACAGGATGAGTTTCGGATGCAATGACAAGTTACAACTCGGATCGCTCATCTCATCTTTTACTCGAGCTAGATCTGCACTTGTCGCTGCTGCACAGTAG | 1368 | 43.93 | MSEAIAVMDIDDDNGNNEDEKSVEGKNVANPADAPDGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNVHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALNILQSTHMASQHITEEAVYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEIKTRKGLALVDIVREVTLLDVTEGGLAALVRLCTGDMRKALNILQSTHMASQHITEEAVYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEIKTRKGLALVDIVREVTLFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVAAAQ | 455 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 6038030 | 6047162 | + | Cp4.1LG13g04660.1 | Cpe13g00630 | 479828 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe13g00630 | 455 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 37 | 307 | - | - | |
Cpe13g00630 | 455 | Gene3D | - | 310 | 354 | - | - | |
Cpe13g00630 | 455 | Pfam | ATPase family associated with various cellular activities (AAA) | 76 | 196 | IPR003959 | GO:0005524|GO:0016887 | |
Cpe13g00630 | 455 | CDD | AAA | 60 | 198 | - | - | |
Cpe13g00630 | 455 | Pfam | Replication factor C C-terminal domain | 356 | 442 | IPR013748 | - | |
Cpe13g00630 | 455 | CDD | HLD_clamp_RFC | 199 | 261 | - | - | |
Cpe13g00630 | 455 | Gene3D | - | 356 | 453 | - | - | |
Cpe13g00630 | 455 | CDD | HLD_clamp_RFC | 309 | 353 | - | - | |
Cpe13g00630 | 455 | PANTHER | REPLICATION FACTOR C SUBUNIT 5 | 309 | 451 | - | - | |
Cpe13g00630 | 455 | Gene3D | - | 36 | 198 | IPR027417 | - | |
Cpe13g00630 | 455 | Gene3D | - | 265 | 309 | - | - | |
Cpe13g00630 | 455 | PANTHER | REPLICATION FACTOR C SUBUNIT 5 | 37 | 307 | - | - | |
Cpe13g00630 | 455 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 309 | 451 | - | - | |
Cpe13g00630 | 455 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 40 | 258 | IPR027417 | - | |
Cpe13g00630 | 455 | Gene3D | - | 201 | 263 | - | - | |
Cpe13g00630 | 455 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 356 | 446 | IPR008921 | GO:0003677|GO:0006260 | |
Cpe13g00630 | 455 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 264 | 308 | IPR008921 | GO:0003677|GO:0006260 | |
Cpe13g00630 | 455 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Cpe13g00630 | 455 | SMART | AAA_5 | 72 | 203 | IPR003593 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00548 | Cpe-Chr1:3153800 | Cpe13g00630 | Cpe-Chr13:6038030 | 2.43E-10 | dispersed | |
Cpe13g00630 | Cpe-Chr13:6038030 | Cpe14g00652 | Cpe-Chr14:4240178 | 3.39E-10 | dispersed | |
Cpe19g01086 | Cpe-Chr19:7379515 | Cpe13g00630 | Cpe-Chr13:6038030 | 1.69E-06 | dispersed | |
Cpe08g00457 | Cpe-Chr8:2937720 | Cpe13g00630 | Cpe-Chr13:6038030 | 7.64E-07 | transposed | |
Cpe14g00835 | Cpe-Chr14:6781291 | Cpe13g00630 | Cpe-Chr13:6038030 | 4.07E-07 | transposed | |
Cpe19g00815 | Cpe-Chr19:6100226 | Cpe13g00630 | Cpe-Chr13:6038030 | 2.28E-14 | transposed | |
Cpe01g02062 | Cpe-Chr1:17463372 | Cpe13g00630 | Cpe-Chr13:6038030 | 6.06E-91 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe13g00630 | K10756 | - | csv:101217230 | 582.022 |