Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00635 ATGTCCGCTCATAATCGCCGCCCGTCGTTTTCGTCGTCGACGTCGTCGTCGTTGGCTAAACGACAAGCGTCGTCGGCCTCGTCGTCCGATAATGTCGGAAAGGTTGTGGCAGTTCCGCCACACTTGGCGAAGAAGCGAGCGCCACTCGGTAACCTAACGAATCTCAAGAGTGTGTCTCATACTGCTGCTAAAAGCTCTGTTCCGCCTGCTATTATGGTGCCTTGTGCAACCAAAGCTGTCAAGGCAAGGAAGAGTTCCCCTGCTAGAACTCGCATTGCTAACTTGCCGGCGGCGGCTCATACAGCTACATTGATTGATGTCAAAACGACGAATTCAATTGTCCCTAGCAATGTTCCAGCAATCTCAAGAACTGATGCCACCGCCGTCTCTAGTAGTATGGATGTCTCTCCGACTAAATCAGATGGAGTGTCACTTTCCTTAGATGAAACTATGTCTACTTGTGATTCTTTTAAGAGTCCTGACGTTGAGTACATGGACAATACTGATGTCCCAGCCGTTGATTCCGTTGAGAGGAAAACTAAAGCCAGTCTCTGCATTTCAGGTCACCCACCAATTAAAGGTAGCATATGCAATAGAGATGCACTTGCAGAAATGGAAACAGATAGCGATATCATTGATGTTGATACCGATTTCATGGATCCCCAGCAATGTGCTACAATTGCTTGTGATATTTACAAGCACTTGCGAGCATCTGAGGCTAAGAAAAGGCCTTCTACAGATTTCATGGAGAAAATTCAGAAGGATGTAAATTCAAATATGCGTGCCATACTGATTGATTGGCTTGTGGAGGTAGCAGAAGAGTATAGGCTTGTGCCAGATACTTTATATTTGACAGTGAACTACATCGATCGATACCTATCGGGAAACTCGATGGATCGACAACGATTACAGTTGCTTGGTGTTGCTTGCATGATGATTGCTTCAAAATATGAAGAGATCTGTGCACCTCAAGTGGAAGAATTTTGTTACATAACTGATAACACCTACTTCAAAGAAGAGGTATTGCAAATGGAATCTTCTGTCTTGAATTACTTGAAGTTTGAAATGACAGCTCCAACACCGAAATGTTTCTTAAGGCGATTTGTTCGAGCTGCTCAAGGGTCCACCGATGAGGTTTCGTCGATGCAGCTGGAATGCTTGTCCAACTTCCTAGCTGAATTATCTCTTTTGGAATACAGTATGCTATGCTACGCACCGTCGCTCGTAGCTGCGTCGGCGATCTTCTTGGCGAAGTTCATACTTGTTCCAACCAAAAGACCATGGAACTCGACCTTGCAGCATTATACACATTATCAGCCATCCGACCTTGTCGAGTGCGTCAAGGATTTACATCGCCTCTGCTGTAACGCCCACAATTCTAGCTTACCAGCCATCAGAGAGAAATACAGCCAGCATAAGTACAAGCACGTGGCGAAGAAGTATTGCCCTCCGACGATACCGCCCGAGTTTTTCCAGACTCAAACACAGTAG 1491 45.67 MSAHNRRPSFSSSTSSSLAKRQASSASSSDNVGKVVAVPPHLAKKRAPLGNLTNLKSVSHTAAKSSVPPAIMVPCATKAVKARKSSPARTRIANLPAAAHTATLIDVKTTNSIVPSNVPAISRTDATAVSSSMDVSPTKSDGVSLSLDETMSTCDSFKSPDVEYMDNTDVPAVDSVERKTKASLCISGHPPIKGSICNRDALAEMETDSDIIDVDTDFMDPQQCATIACDIYKHLRASEAKKRPSTDFMEKIQKDVNSNMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNSMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESSVLNYLKFEMTAPTPKCFLRRFVRAAQGSTDEVSSMQLECLSNFLAELSLLEYSMLCYAPSLVAASAIFLAKFILVPTKRPWNSTLQHYTHYQPSDLVECVKDLHRLCCNAHNSSLPAIREKYSQHKYKHVAKKYCPPTIPPEFFQTQTQ 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6074518 6084525 + Cp4.1LG13g04500.1 Cpe13g00635 479833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00635 496 CDD CYCLIN 260 349 IPR013763 -
Cpe13g00635 496 SUPERFAMILY Cyclin-like 220 356 IPR036915 -
Cpe13g00635 496 PANTHER CYCLIN-A1-1 34 494 - -
Cpe13g00635 496 ProSitePatterns Cyclins signature. 261 292 IPR006671 -
Cpe13g00635 496 SMART Cyclin_C_2 359 483 IPR004367 -
Cpe13g00635 496 PIRSF Cyclin_A_B_D_E 5 490 IPR039361 -
Cpe13g00635 496 Pfam Cyclin, N-terminal domain 230 356 IPR006671 -
Cpe13g00635 496 Gene3D - 230 479 - -
Cpe13g00635 496 Coils Coil 495 496 - -
Cpe13g00635 496 SUPERFAMILY Cyclin-like 359 486 IPR036915 -
Cpe13g00635 496 PANTHER CYCLINS 34 494 IPR039361 -
Cpe13g00635 496 Gene3D - 244 357 - -
Cpe13g00635 496 MobiDBLite consensus disorder prediction 1 32 - -
Cpe13g00635 496 SMART cyclin_7 266 350 IPR013763 -
Cpe13g00635 496 SMART cyclin_7 363 452 IPR013763 -
Cpe13g00635 496 CDD CYCLIN 357 451 IPR013763 -
Cpe13g00635 496 Pfam Cyclin, C-terminal domain 359 479 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00070 Cpe-Chr1:418597 Cpe13g00635 Cpe-Chr13:6074518 1.41E-20 dispersed
Cpe01g00949 Cpe-Chr1:5618065 Cpe13g00635 Cpe-Chr13:6074518 2.22E-18 dispersed
Cpe02g00206 Cpe-Chr2:1058884 Cpe13g00635 Cpe-Chr13:6074518 1.73E-103 dispersed
Cpe06g00185 Cpe-Chr6:995417 Cpe13g00635 Cpe-Chr13:6074518 1.27E-104 dispersed
Cpe07g00503 Cpe-Chr7:3300135 Cpe13g00635 Cpe-Chr13:6074518 8.70E-102 dispersed
Cpe11g00133 Cpe-Chr11:725289 Cpe13g00635 Cpe-Chr13:6074518 1.16E-99 dispersed
Cpe12g00714 Cpe-Chr12:6723254 Cpe13g00635 Cpe-Chr13:6074518 3.49E-106 dispersed
Cpe13g00635 Cpe-Chr13:6074518 Cpe17g00601 Cpe-Chr17:4969863 1.80E-103 dispersed
Cpe01g02068 Cpe-Chr1:17525206 Cpe13g00635 Cpe-Chr13:6074518 2.95E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00635 K06627 - csv:101221569 882.478