Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00644 ATGAAATTGCTCCAAAATGGGGTCGCCGTCGAGCCACTTCCAGTTAATTGCGGCCGGACTGTGTTGGTGGGCATGAAATTGGACTCTCATAGTAGAGAGTTGTTGACTTGGGCTTTGGTTAAGGTCGCTCAGCCTGGTGACCTTGTGATCGCTCTTCATGTTCTTGGTAACGATGAAATTGTGAATCAAGATGGGAAATCTTCGCTTCTTTCTCTTGTAAAAGCGTTTGATTCTGTGTTGGCTGTTTATGAAGGCTTCTGTAACTTGAAGCAGGTGGATCTGAAGCTCAAAATCTGCAGAGGAGCATCGGCAAGGAAGATCTTAGTTCGTGAAGCGAAATCGTATCGTGCTACGAACGTGATTGTTGGGACTGCTCGTAAGCTTCACAAAATCCGTTCATCGACTTCCGTTGCCAAATACTGCGCCAGAAAGTTACCCAAGGATTTTTGGGTACTCGCTGTTCATAATGGGAAGGTGATGTTCGAACGAGAGGGCTGTTCAGTGGCGGCCATAGGCGACTGCCAAGGAAAAGATGAACAACGCCAGAGCAATTTGCTCTGTGCAGTTTATGGATCGTCTGGTAGCCCTCACAAAGTTCAAAGGGGTGAGAGTTTTGCTTCTCTGTTGGCGAGGGACGGCGGTACTCTGGGAATTGGTAAGGATTCTGTCCAGGGATTAGCCAAAGCCATAATTGTCGGTACCGATAAACAGAACTGCTCGATTTGTGGATCGGAGTCGACTTCTGTGGAGCAATCTGCTGATATATCCTCTGGTGATGGAGATAAACATGATGAATCTTTGGCTATAGTTCCAGTACATAATGTTGAGGTAGCGTTAAGCTCGATTACTAATTTGATTAAGCAATTGCCTGAAGTGAAACCCGGTTGGCCTCTGCTTCGACATGTCGATCAGTCAGGTCAATCGGATCGACAACGTTCTTCCGATCGATCGATGGCTAAGAAAATCTCTGTAGTTCAATGGGCAATGAGGTTGCCTAGCCGATCTCCGCCTTACCCTGCTGCTTTGGATTATAAAACTAATACCTCTGATCAATATTTGGGTCTTGATGGGGAAAATGGAGCTATGGTTCTTGTGGGTTCTGAACCAGTGACATCTCTGCTCTCCCCGGAGTCTTGTTCGGAAACCTCACCGAAAGAATTGGAAGGTTTTCACGAGAAATACTCGTCGACTTGTAGATTGTTTACTTATCATGAACTCGTTACAGCGACATCGAATTTCTTACCTGAAAATTTGATTGGGAAAGGAGGAAGCAGCCAAGTTTACAGAGGTTGTCTTCCTGATGGCAAGGAGGTTGCTGTGAAGATCTTGAAGCCATCAGAAGACGTTCTAAAGGAGTTCGTAGTCGAAATCGAGACCGTTACCTCCTTAAGCCATAAGAACATCATATCCCTTTTGGGATTTTGCTTTGAAAATAGCAAGTTCTTGTTGGTTTATGATTTTCTCTCAAGAGGAAGTCTTGAAGAAATCCTTCACGTTGAACTAGGAAATGGAAAGAATCCAAATGCATTTGGTTGGAATGAAAGATTCAAGGTAGCTGTTGGTGTAGCTGAGGCGTTGGATTATCTCCACGACGATGCTCAGCATGTGATCCATAGGGATGTTAAATCGTCGAACGTTTTGTTATCTGATGATTTCGAACCGCAGTTATCAGATTTCGGGCTCGCTAAACAGGCATCGAACTCGTCGCACGTAACGTGTACAGACGTTGCAGGAACCTTCGGTTATGGACGTTTTCCATTCTCAAATGAAAATCATATCATCCAGGCAAAGCCAATTTTAATCGACGGGAAGGTATCTCAATTACTCGATCCTAGCTTGGGAGGTAACTACGACGAGGACGAGATGGAGCGTGTAATTCTTGCAGCGAGCCTTTGTATCAGACGCGCCCCACGAGCTAGGCCTCCAATGAGCCTTGTTGTAAAACTTCTCCAAGGTGATGTAGATGTAACCAAATGGTCAAGGCAACAGATGAATGGTGTAGGGGATTGTAACACTGTAGATGATGAAGTATGTCCACGATCCGATATCCAATCACATCTCAACGTTGCGCTGCTCGACGTCGACGATGACTCGCTCTCCTTGAGCAGCGTCGAGCAGAGTATCTCATTGGAGGAGTATTTGCAAGGCAGATGGAGCCGTTCGTCGAGTTTCGACTAA 2178 45.64 MKLLQNGVAVEPLPVNCGRTVLVGMKLDSHSRELLTWALVKVAQPGDLVIALHVLGNDEIVNQDGKSSLLSLVKAFDSVLAVYEGFCNLKQVDLKLKICRGASARKILVREAKSYRATNVIVGTARKLHKIRSSTSVAKYCARKLPKDFWVLAVHNGKVMFEREGCSVAAIGDCQGKDEQRQSNLLCAVYGSSGSPHKVQRGESFASLLARDGGTLGIGKDSVQGLAKAIIVGTDKQNCSICGSESTSVEQSADISSGDGDKHDESLAIVPVHNVEVALSSITNLIKQLPEVKPGWPLLRHVDQSGQSDRQRSSDRSMAKKISVVQWAMRLPSRSPPYPAALDYKTNTSDQYLGLDGENGAMVLVGSEPVTSLLSPESCSETSPKELEGFHEKYSSTCRLFTYHELVTATSNFLPENLIGKGGSSQVYRGCLPDGKEVAVKILKPSEDVLKEFVVEIETVTSLSHKNIISLLGFCFENSKFLLVYDFLSRGSLEEILHVELGNGKNPNAFGWNERFKVAVGVAEALDYLHDDAQHVIHRDVKSSNVLLSDDFEPQLSDFGLAKQASNSSHVTCTDVAGTFGYGRFPFSNENHIIQAKPILIDGKVSQLLDPSLGGNYDEDEMERVILAASLCIRRAPRARPPMSLVVKLLQGDVDVTKWSRQQMNGVGDCNTVDDEVCPRSDIQSHLNVALLDVDDDSLSLSSVEQSISLEEYLQGRWSRSSSFD 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6153030 6156561 + Cp4.1LG13g04350.1 Cpe13g00644 479842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00644 725 PANTHER - 586 708 - -
Cpe13g00644 725 PANTHER - 14 582 - -
Cpe13g00644 725 SUPERFAMILY Protein kinase-like (PK-like) 394 655 IPR011009 -
Cpe13g00644 725 CDD USP_Like 20 154 - -
Cpe13g00644 725 Pfam Universal stress protein family 19 151 IPR006016 -
Cpe13g00644 725 Gene3D Phosphorylase Kinase; domain 1 377 487 - -
Cpe13g00644 725 MobiDBLite consensus disorder prediction 299 318 - -
Cpe13g00644 725 ProSiteProfiles Protein kinase domain profile. 413 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00644 725 ProSitePatterns Serine/Threonine protein kinases active-site signature. 536 548 IPR008271 GO:0004672|GO:0006468
Cpe13g00644 725 Pfam Protein kinase domain 417 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00644 725 ProSitePatterns Protein kinases ATP-binding region signature. 419 441 IPR017441 GO:0005524
Cpe13g00644 725 Gene3D Transferase(Phosphotransferase) domain 1 584 668 - -
Cpe13g00644 725 PANTHER OS08G0249100 PROTEIN 586 708 - -
Cpe13g00644 725 PANTHER OS08G0249100 PROTEIN 14 582 - -
Cpe13g00644 725 SMART serkin_6 413 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00644 725 Gene3D Transferase(Phosphotransferase) domain 1 488 583 - -
Cpe13g00644 725 Gene3D HUPs 18 155 IPR014729 -
Cpe13g00644 725 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 19 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00644 - - - cmax:111489737 1310.82
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02077 Cpe13g00644 CCT
Cpe01g02077 Cpe13g00644 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01044 Cpe-Chr5:6907209 Cpe13g00644 Cpe-Chr13:6153030 0 dispersed
Cpe05g01372 Cpe-Chr5:9644701 Cpe13g00644 Cpe-Chr13:6153030 2.02E-75 dispersed
Cpe10g00378 Cpe-Chr10:2229585 Cpe13g00644 Cpe-Chr13:6153030 1.29E-69 dispersed
Cpe13g00644 Cpe-Chr13:6153030 Cpe16g00096 Cpe-Chr16:1789855 5.94E-29 dispersed
Cpe01g02077 Cpe-Chr1:17624119 Cpe13g00644 Cpe-Chr13:6153030 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1149 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . Cpe13g00644 Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . . . . . . . . . . . . . . . . . Car04g02316 . Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004130 2 1 2 2 1 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 1 1 1 1 0 3 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62794 PF00069 Pkinase 2.00E-31 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00644 Cpe_Chr13 FPKM 3.09378 2.513995 3.766576 4.940085 5.427997 4.327068 6.119795 6.635077 6.629068 6.379443