Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00653 ATGGGTAACCTCAGCGCCAGAACCCAACCCACCGGCGCCAAAGCCGCTGCCACCACAATCCTCAAATACCTAGAAGAGGGTCGCCTCCGAAAAGCTGTCTCGGTTCTGTTTGATTCCCCCTTCCCTTTTCCTCATCCCTTTGTACTTGGGTCTTGCGGTTCTGTTTTGGCTCTTCACCTCTCTAGGCAAGTTCACGGGCATATTGTGAAATCTGGCTTTGTTGGCAATGTGATTCTTGAGAGCTCGCTTGTTGATGTCTATGGAAAGTGTAGGCTTATGAATGATGCACGTAGCATGTTTGATGAAATCCAGAATCGAAATGATGTTTCCTGGAATGTTATTGTTAGGCGCTATCTTGAGGTGGACGATGGTAAAATGGCAGTGTCAATGTTTTTCCAAATGTTCCGAGAGGCAGTGATGCCATTGAGTTTTACTTTTTCCAATGCTCTGATTGCTTGTTCAAGTATGGCAGCACTCATAGAAGTTAGTGGAGCTTTAGTTGATATGTACTGTAAATGCCGACAACTTGAGTACGCCCTCAAGGTTTTTGAAAATGCAGCTTCGCGCGATGTGGTTCTGTGGAACTCCATAATTTTAGGATGTTGTCACAACGGAAGGGGTATGATAGTAATCGAATTGTTTCAAATGATGATGATGGAGAAAGGCATTAGCCCGGACCATGTGACCTTCCAAGGTATTTTGCTTGCTTGTGTCTATGAAAATCTCGTTGAGTTAGGTAGGCAGTATTTCGATTCAATGAGTGACAAGTTCTGTATCATACCTCGATTAGAGCACTATGAATGCATGATCGAGCTCTATGGCCGACATGGAAACATGGATGAGCTTGAAAAATTTATCAACAATATGCCCTTTGATCCTACTGTTTCAATGCTAGAAAAAGTCCTTGATGCATGTAGAAAACACGGACACTCGAGTGAAATCATGAAAGCAACAAAATCTATCCCATCAACTCAAGCATTCATGGGTATATTTAGATTTGGCGATGTCAAAAGTGCACGCCATCAGGTAATGCCTGAGAAGGACATTATTTCTTGGAACTCAACGATTTCTGCTTTTTGGAGCTCTTGTCATGTCATGCTCTCAAGCATTGCATGGCATGGTCATCAGAGCGATTCCATGTGGCTTTTTGTGCACTCCATAAGGGAGAACCTCAGGCCAATTGAGATTACACTGAGCAGTGTGCCGAGCTCCATTTCAGTCTTCACACCTTTGGGTTTCGAATCTGAAGCCATTGTCTCTCGTTCGCTGGTAAGCATGTATCCTGAACCACATGAAAATATGTCCGTTAGAGATTTGATATCATGGAACACTATGATTATGGTTCTGGTTAACAATGTATACTTTGAAGCCCTACGAACTTTTAATAAATTGGTCAGGGAAGGTGTACTGCCTGATAGGATAACTCTAGCTGGAGTCTTATTAGCTTGCAGTCATGCTGGTTTTGTTGAGGATGGGATATTGGGCTGGAAATTTGAAGCAGTTATTATTATTAAAACACCAAAATGCCAATCTACTTCTACACTTTGCAAGTCACTTCTTGGTGTCTGTGCAATTCATGGAGACCTAAAAGTTGTTGAAAGAGTTGCAGAGAGGGTGGTGAAGCTGGAACTGCAATCATCCTTACTGTATTCGGTACGGGTCGGTGCAGGCTCAAGCATTTGCAATGAG 1689 43.04 MGNLSARTQPTGAKAAATTILKYLEEGRLRKAVSVLFDSPFPFPHPFVLGSCGSVLALHLSRQVHGHIVKSGFVGNVILESSLVDVYGKCRLMNDARSMFDEIQNRNDVSWNVIVRRYLEVDDGKMAVSMFFQMFREAVMPLSFTFSNALIACSSMAALIEVSGALVDMYCKCRQLEYALKVFENAASRDVVLWNSIILGCCHNGRGMIVIELFQMMMMEKGISPDHVTFQGILLACVYENLVELGRQYFDSMSDKFCIIPRLEHYECMIELYGRHGNMDELEKFINNMPFDPTVSMLEKVLDACRKHGHSSEIMKATKSIPSTQAFMGIFRFGDVKSARHQVMPEKDIISWNSTISAFWSSCHVMLSSIAWHGHQSDSMWLFVHSIRENLRPIEITLSSVPSSISVFTPLGFESEAIVSRSLVSMYPEPHENMSVRDLISWNTMIMVLVNNVYFEALRTFNKLVREGVLPDRITLAGVLLACSHAGFVEDGILGWKFEAVIIIKTPKCQSTSTLCKSLLGVCAIHGDLKVVERVAERVVKLELQSSLLYSVRVGAGSSICNE 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6191627 6196371 + Cp4.1LG13g04380.1 Cpe13g00653 479851

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00653 563 Pfam PPR repeat 81 107 IPR002885 -
Cpe13g00653 563 Pfam PPR repeat 266 289 IPR002885 -
Cpe13g00653 563 Pfam PPR repeat 109 136 IPR002885 -
Cpe13g00653 563 Pfam PPR repeat 165 184 IPR002885 -
Cpe13g00653 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 225 IPR002885 -
Cpe13g00653 563 Gene3D Tetratricopeptide repeat domain 162 343 IPR011990 GO:0005515
Cpe13g00653 563 Gene3D Tetratricopeptide repeat domain 344 554 IPR011990 GO:0005515
Cpe13g00653 563 PANTHER OS07G0578800 PROTEIN-RELATED 432 492 IPR045215 GO:0003723|GO:0009451
Cpe13g00653 563 PANTHER OS07G0578800 PROTEIN-RELATED 52 161 IPR045215 GO:0003723|GO:0009451
Cpe13g00653 563 PANTHER OS07G0578800 PROTEIN-RELATED 5 45 IPR045215 GO:0003723|GO:0009451
Cpe13g00653 563 Gene3D Tetratricopeptide repeat domain 20 161 IPR011990 GO:0005515
Cpe13g00653 563 TIGRFAM PPR: pentatricopeptide repeat domain 192 226 IPR002885 -
Cpe13g00653 563 PANTHER OS07G0578800 PROTEIN-RELATED 162 312 IPR045215 GO:0003723|GO:0009451
Cpe13g00653 563 Pfam PPR repeat family 189 237 IPR002885 -
Cpe13g00653 563 PANTHER OSJNBA0006B20.8 PROTEIN 162 312 - -
Cpe13g00653 563 PANTHER OSJNBA0006B20.8 PROTEIN 52 161 - -
Cpe13g00653 563 PANTHER OSJNBA0006B20.8 PROTEIN 432 492 - -
Cpe13g00653 563 PANTHER OSJNBA0006B20.8 PROTEIN 5 45 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00653 - - - csv:101210115 327.02
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe06g00053 Cpe13g00653 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00653 Cpe-Chr13:6191627 Cpe10g00625 Cpe-Chr10:3620218 3.64E-22 dispersed
Cpe13g00653 Cpe-Chr13:6191627 Cpe12g01030 Cpe-Chr12:8591984 2.24E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1171 . . . . . . . . . . . . . . . Cpe06g00053 Cpe13g00653 Bhi04g00088 . . . . . . . . . . . . . . . . Cone20ag0415 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012345 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 2 1 1 1 1 1 1 1 1 2 0 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00653 Cpe_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.676417 0.0 0.0 0.0