Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00655 GTCTCCACCAATATGGTGAACGATACTGAGTATTACGACATTCTCGGTGTTCGTCCTTCTGCTTCCGAGGACGAGATTCGTAAAGCCTATTATCTTAAGGCGAAACAAGTCCATCCGGATAAGAATTTGAATGATCCTCAAGCTGCTGAAAGGTTTCAGGCAAGTGAAGCCTATCAAGTTTTGAGTGATGCAGTCCAAAGAGATGCATATGATAGGAATGGGAAGCACAGTATTACTAGGGAATCCATGCTTGACCCTACTGCTGTCTTTGCACTTCTATTTGGAAGTGAATTGTTTGAGGACTATATTGGACATTTAGCTGTAGCATCAATGGCTTCATCTGAATTAGAGAGCGAAACTGGTAATTCAGAGAGATTACAAGATAAGTTGAAGGCAAAAAGAGAAGAAAAACTTGCACGCATACTTGAGGGTTTTCTTAATCAATATGTTCAAGGTGACAAAGACGGATTCTTACGGCATGCTGAATCTGAAGCCAAAAGACTCTCTAATGCGGCTTTTGGTATTAGTATACTACACACGATAGGCTACATTTATTCAAGACAAGCAGCACAGGAGCTTGGAAAGAGAGCCATTTATCTTGGCGTGCCATTTGTGGCTGAATGGTTTCGCAACAAGGGGCATTTTTGGAAGTCACAGATAACAGCTGCAAAAGGCAGGAAGATCTCAAGCTTACAATTTGTCTTCTTTTCCTCATCGATGATGAAGTATTTTTCTTTAATAATTTGCTACTTAATCATATCAACTATTTATATGTATCAGTTGTTACAACTTCAAGATGATATTTGCCGGCAGTATAAAATGGATGGTAGTGGTCCTGAAAATGATGTTGAATCGCATATTAGATCGAATAAAGACACATTCCTCAATTCTTTGTGGAAGCTTAACGTGGTGGACATAGAACTGACTCTTATTAATGTGTGCCAGATGGTACTACGGGATAATACTGTGAAAAGGGAAGAACTAAAAGCTCGTGCTCTGGCTCTGAAGATTCTTGGAAATATATTCCAGCAGGAGAAGCAAGCACAAAATGGTGGAACATCAAGAAAGAAAAGTGCTGCTGCAGTAGATGACGATGGAACGAGTTCAGAGAGCAGCGACGATGAGGATGATCCCCGAAGACCACTATCTTATCGAACTCCTTTTCTTACTCAGGCAAGGTATAGGGAGACTCTTCAGATGCCTCTGTAA 1209 40.61 VSTNMVNDTEYYDILGVRPSASEDEIRKAYYLKAKQVHPDKNLNDPQAAERFQASEAYQVLSDAVQRDAYDRNGKHSITRESMLDPTAVFALLFGSELFEDYIGHLAVASMASSELESETGNSERLQDKLKAKREEKLARILEGFLNQYVQGDKDGFLRHAESEAKRLSNAAFGISILHTIGYIYSRQAAQELGKRAIYLGVPFVAEWFRNKGHFWKSQITAAKGRKISSLQFVFFSSSMMKYFSLIICYLIISTIYMYQLLQLQDDICRQYKMDGSGPENDVESHIRSNKDTFLNSLWKLNVVDIELTLINVCQMVLRDNTVKREELKARALALKILGNIFQQEKQAQNGGTSRKKSAAAVDDDGTSSESSDDEDDPRRPLSYRTPFLTQARYRETLQMPL 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6205348 6209161 - Cp4.1LG13g04290.1 Cpe13g00655 479853

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00655 402 CDD DnaJ 10 63 IPR001623 -
Cpe13g00655 402 ProSiteProfiles dnaJ domain profile. 10 74 IPR001623 -
Cpe13g00655 402 Gene3D DnaJ domain 2 89 IPR036869 -
Cpe13g00655 402 Coils Coil 116 136 - -
Cpe13g00655 402 SUPERFAMILY Chaperone J-domain 4 104 IPR036869 -
Cpe13g00655 402 Pfam DnaJ domain 10 71 IPR001623 -
Cpe13g00655 402 SMART dnaj_3 9 66 IPR001623 -
Cpe13g00655 402 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 5 226 - -
Cpe13g00655 402 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 259 396 - -
Cpe13g00655 402 MobiDBLite consensus disorder prediction 348 402 - -
Cpe13g00655 402 PRINTS DnaJ domain signature 46 66 IPR001623 -
Cpe13g00655 402 PRINTS DnaJ domain signature 66 85 IPR001623 -
Cpe13g00655 402 PRINTS DnaJ domain signature 12 30 IPR001623 -
Cpe13g00655 402 PRINTS DnaJ domain signature 30 45 IPR001623 -
Cpe13g00655 402 Pfam X-domain of DnaJ-containing 131 354 IPR026894 -
Cpe13g00655 402 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 5 226 - -
Cpe13g00655 402 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 259 396 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00655 - - - cmo:103485662 612.453
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02091 Cpe13g00655 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01276 Cpe-Chr5:8903672 Cpe13g00655 Cpe-Chr13:6205348 1.94E-99 dispersed
Cpe13g00655 Cpe-Chr13:6205348 Cpe16g00258 Cpe-Chr16:4598125 7.98E-89 dispersed
Cpe01g02091 Cpe-Chr1:17715313 Cpe13g00655 Cpe-Chr13:6205348 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1178 . Blo12g00834 . Bda03g00342 . Bpe04g00302 . . Cmo04g02530 Cmo15g00644 . . . . . . Cpe13g00655 Bhi04g01834 . . . . . . . . . . . . . . . Cone17ag0805 Cone20ag0410 . . . Cme03g00430 . Blo18g00226 . Bda01g01383 Bpe02g01596 . Bma01g00878 . . . . . . Car04g02328 Car15g00585 Cpe01g02091 . . . . . . . . . . . . . . . . . Chy03g00571 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002184 1 3 2 3 3 1 3 1 0 2 1 2 2 1 2 3 0 3 2 1 2 2 2 2 1 3 2 4 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00655 Cpe_Chr13 FPKM 0.0 0.0 1.407352 1.40343 30.681297 34.443256 30.364363 0.0 0.0 0.0