Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe13g00656 | ATGTCTTCGAGGGATCCTAACGCCATCTTCAGTGGAGGCGGTATCAGTTTTCTTAATGGAAATCAGACTGGAAAGTTCAGCTATGGGTATTCTAGTTTCAAAGGAAAAAGGGCTTCGATGGAGGACTTCTATGAAACAAGAATTTCTGAAGTTGACGGGCAGATGGTCGCTTTTTTTGGTGTTTTTGATGCTATTCCCCTCTCTATTGATCACAAACCTGATAGATCAGATGAACGAGAAAGGATTGAACAAGCTGGAGGTTTCATTATTTGGGCAGGAACTTGGAGGGTTGGTGGTATTCTAGCAGTTTCGCGTGCCTTTGGAGATAAGCTACTCAAACCATATGTTGTTGCTGATCCTGAAATACAGGAAGAAGAAATTGACGGTGTAGATTTTATTATCATTGCAAGTGATGGACTTTGGAATGTTTTATCAAATGAGGATGCTGTAGCATTGGTGCAACACATCCAAGATACAGAAGTGGCATCAAGAACACTAATCCAAGAAGCGTATGCTCGAGGGAGTTCCGACAACATTACATGTGTCATTGTACGATTTGGTCTATCGTAA | 570 | 41.4 | MSSRDPNAIFSGGGISFLNGNQTGKFSYGYSSFKGKRASMEDFYETRISEVDGQMVAFFGVFDAIPLSIDHKPDRSDERERIEQAGGFIIWAGTWRVGGILAVSRAFGDKLLKPYVVADPEIQEEEIDGVDFIIIASDGLWNVLSNEDAVALVQHIQDTEVASRTLIQEAYARGSSDNITCVIVRFGLS | 189 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 6210136 | 6214760 | - | Cp4.1LG13g04270.1 | Cpe13g00656 | 479854 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe13g00656 | 189 | CDD | PP2Cc | 63 | 186 | IPR001932 | - | |
| Cpe13g00656 | 189 | Gene3D | - | 64 | 189 | IPR036457 | - | |
| Cpe13g00656 | 189 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 186 | IPR001932 | - | |
| Cpe13g00656 | 189 | SUPERFAMILY | PP2C-like | 64 | 187 | IPR036457 | - | |
| Cpe13g00656 | 189 | Pfam | Protein phosphatase 2C | 65 | 179 | IPR001932 | - | |
| Cpe13g00656 | 189 | PANTHER | PROTEIN PHOSPHATASE 2C 11-RELATED | 64 | 188 | - | - | |
| Cpe13g00656 | 189 | PANTHER | PROTEIN PHOSPHATASE 2C 11-RELATED | 3 | 63 | - | - | |
| Cpe13g00656 | 189 | PANTHER | ALPHABET, ISOFORM E-RELATED | 3 | 63 | - | - | |
| Cpe13g00656 | 189 | PANTHER | ALPHABET, ISOFORM E-RELATED | 64 | 188 | - | - | |
| Cpe13g00656 | 189 | SMART | PP2C_4 | 17 | 184 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe13g00656 | Cpe-Chr13:6210136 | Cpe14g00052 | Cpe-Chr14:290547 | 6.31E-68 | dispersed | |
| Cpe01g02092 | Cpe-Chr1:17720587 | Cpe13g00656 | Cpe-Chr13:6210136 | 6.19E-102 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe13g00656 | K17506 | - | csv:101220053 | 232.261 |