Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00666 ATGGCCTCTGTGGATGAGAAGTATCGTTCGCTTTTGCTTGGAGATGAAGAGAAGAACACCAAATGGAGATTTGGGGTTCCTCCTAACTACGATGTTGTCAACAAGCTCTTCGAAGAAGAGCGGACTAATGTATGGCCTGTTGGATCACTTGAAGAGAGAGTGCAAAGCCTGGTGAAGAATTTTGAGATGGAAATGTTCCATAAGATTTCAAGCACTGATTTCAGAACAATAGATTTAAACAAGTTTACTTTCTGTCTCAATGGAAGAAAGCCTTTAAGTATTGAAGAAACTAGTAAACTTGGAGGTTACAATCCCTTCCTTCAGACCTCCATCCCTGAGGAGTATAGGTACTATAATGCTGCAAAGGAGACTGCTGCATCTTCTCACCAAGCTTTCACTGCCACGTTCCCTCGAGGTTTTGCTCTCGAGATTATCCAAGTTTATTCAGGGCCTCCTGATATTGTGTTCAAGTTTAGGCATTGGGGATACATGGAGGGAGCTTTTAAAAGCCATGCCCCCACTGGGGAGAGAATTGAATTCTTTGGAGTTGCCATTTTTAAGGTGAATGAGAATGATATAATTTTGGGGGTGGAGTTCTTTTTTGACCCAGGGGAATTGCTTGGGAAACTCATGAAAGGTCCTCGCTTGGATGGCTCGGTTGAAAAGGCGGTTTCGAGCTGCCCTATCTTGAGAAACACAGGGTAG 705 43.55 MASVDEKYRSLLLGDEEKNTKWRFGVPPNYDVVNKLFEEERTNVWPVGSLEERVQSLVKNFEMEMFHKISSTDFRTIDLNKFTFCLNGRKPLSIEETSKLGGYNPFLQTSIPEEYRYYNAAKETAASSHQAFTATFPRGFALEIIQVYSGPPDIVFKFRHWGYMEGAFKSHAPTGERIEFFGVAIFKVNENDIILGVEFFFDPGELLGKLMKGPRLDGSVEKAVSSCPILRNTG 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6282551 6286851 + Cp4.1LG13g04130.1 Cpe13g00666 479864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00666 234 Gene3D - 108 214 - -
Cpe13g00666 234 SUPERFAMILY NTF2-like 122 209 IPR032710 -
Cpe13g00666 234 PANTHER PATHOGENESIS-RELATED FAMILY PROTEIN 5 234 - -
Cpe13g00666 234 PANTHER PATHOGEN-RELATED PROTEIN-LIKE 5 234 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00666 - - - csv:101202865 414.846
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00607 Cpe-Chr1:3500507 Cpe13g00666 Cpe-Chr13:6282551 9.14E-74 dispersed
Cpe13g00666 Cpe-Chr13:6282551 Cpe14g00369 Cpe-Chr14:2239101 2.33E-56 dispersed
Cpe13g00666 Cpe-Chr13:6282551 Cpe06g00891 Cpe-Chr6:5962073 3.52E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1224 . . . . . Bpe04g00021 . . . . . . . . Sed03g0461 . Cpe13g00666 Bhi04g01811 Tan11g1182 Cmetu01g0419 . Hepe02g2772 . Lcy10g1320 Cla08g00666 Cam08g1097 Cec08g0682 Cco08g0791 Clacu08g0803 . Cre08g0607 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00527 . Chy03g00591 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002742 0 2 0 0 1 2 2 2 1 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 3 2 2 2 2 3 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00666 Cpe_Chr13 FPKM 2.153571 2.168808 0.699392 1.458834 5.093406 2.93779 5.847384 0.0 0.0 0.151807