Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00670 ATGGCAGATCCTTTTAGCTATGCAAATGCCGACCGTGATGTCGAGCAGTTTCACAAGGTTGATTTCATCTTGCAGGCATTAATTGCATTGAAGAAGGGTGCTCAACTGCTAAAATATGGTCGTAAAGGAAAGCCGAAGTTCTGTCCATTTAGGCTTTCTAGTGATGAATCGTCCTTGATCTGGATTTCAAGTAAGGGTGAAAGAAGTTTGAAGTTAGCTTCAATCTCACAAATTATACCTGGACAAAGAACTGCTGTCTTTGAACGATATCTTCGTCCAGAAAAGGATTACTTATCATTCTCTCTTATATACAACAACGGGAAGCGATCCCTCGATCTGATCTGTAAGGATAAAGTTGAGGCAGAGGCTTGGATTTCAGGCCTGAAAGCTTTAATTGCATCTGGTCAAGGTGGGCGTTCCAAAATTGATGGCTGGAGTGATGGAGGCCTCTATCTTGACGGAAGTTGTGAATTGACTTCAAATAGCCCGAGTGACAGTTCGCATAGCGTAAATAGAGACAATAGCTCTCCAGAAGTTTATGCGAGTTCGAACGCACATATATCTCTGAAGACTTCTCAACCTGAAAATTACATTGCAAAGTCTGAAAGAGCTCATGTATCATTAAACCAAACCAACATGCAAGTAAAAGGGTCTAGTTCTGATGTTATGCGAGTTAGTGTTTCAAGTGCTCCCAGCACTTCTAGTCATGGGTCTGCACCAGATGATTGTGATGCTCTAGGTGATGTATACATATGGGGTGAGATCGTTGGCGACAATATTGTGAAGATTGGGCCTGAAAGAAGTTACGTGACCTCGAGGACTGATGTACTTCTGCCAAGACCGTTGGAGTCTAACATTGTTCTAGACATACATCATATAGCCTGTGGGGTCAGGCATGCTGCCCTAGTGACAAGGCATGGGGAAATTTTTACATGGGGAGAGGAATCTGGAGGCCGCCTTGGCCATGGTGTGGTGAAGGATGTAATTCAACCTCGTATGGTTGAATCCTTGGCAGCTAGTAATATAGATTTTGTTGCTTGTGGGGAGTTCCATACATGTGCTGTTACAACGACAGGGGAACTTTATACATGGGGTGATGGTACCCATAATGCAGGGCTTCTTGGTCATGGCAGTGATGTAAGCCACTGGATACCAAAGAGAGTCTCTGGTCCACTTGAAGGACTTCAAGTTACTTCAGTGACATGCGGTCCATGGCATACAGCTCTGGTAACATCAATGGGTCAGCTTTTCACATTTGGTGATGGAACATTTGGTGCACTGGGCCATGGAGAAAGAGAAAATATTTCATATCCAAAAGAAGTGGAATCTTTATCAGGCCTGAGGACAATTGCTGTTGCATGTGGGGTGTGGCATACTGCTGCTGTAGTTGAAGTTATTGTGACACAATCTAGTTCAAGCATTTCATCGGGTAAACTGTTTACGTGGGGTGATGGAGATAAAAATCGTCTGGGGCATGGAGATAAGGAGCCCAGACTTAAACCCACATGTGTGCCGGCATTAATTGATTATGATTTTCACAAAGTTGCTTGCGGTCACAGCATAACTGTTGGTTTGACCACTTCAGGGCAAGTTTTCTCAATGGGAAGTACGGTGTATGGACAACTTGGGAATCCCAGTGCTGATGGAAAGATACCTTGCTTGGTAGAGGATAAGCTTTTTGGGGAATCCGTTGAAGAAGTTTCATCTGGTGCATATCATGTGGCGGTATTAACGTCCAAAAATGAAGTTTATACGTGGGGAAAGGGTGCAAACGGGAGATTGGGGCATGGTGATGTTGAAGATCGGAAGACACCAACTTTAGTTGAAGCTTTGAAGGACAGACATGTGAAATATATAGCATGTGGTTCAAATTACACAGCTGCCATTTGTCTTCACAAATGGGTTTCTAGTGCTGAGCAGTCACAGTGCTCTGCTTGCAGACAGGCGTTTGGGTTTACACGGAAGAGACACAACTGTTATAATTGTGGACTTGTGCACTGCCACTCTTGCAGTTCAAGAAAAGCATTAAGAGCAGCACTTGCACCTGATCCCGGAAAACCATATCGTGTATGTGATTCATGCTATGCAAAACTGATCAAGGCATTAGAAGCTAGTAATAACAATAGGAAAAATGCTATGCCTCGCATCTCAGGTGAGAACAAGGATAGGATTGACAAGGCTGATATGAGAATATCTAAGTCAGTGCCTTCCAATATGGACTTGATAAAGCAATTAGATAACAAAGCGGCTAAGCAAGGAAAGAAAGGCGATACCTTCTCCCTTGTCCGATCCTCTCAAGCCCCTCCACTATTGCAGTTTAGAGATGTTGTATTATCAACTGCTGTTGATCTGCGACGGACAGCTCCCAAACCAGTTGTCACTTCTTCTGGAGTAAGTTCTAGATCCGTTTCACCTTTTTCAAGGAAATCAAGCCCACCTCGATCTGCCACTCCTGTTCCCACAGCATCAGGACTTTCCTTTTCCAAAAGCATAACTGATGGTTTGAAGAAAACAAATGATCTTTTGAATCACGAAGTGCTTAAATTGCGTTCACAGGTTGAGAGCCTGAAGCAGAAATGTGAACTTCAGGAACTGGAGCTTCAGAAATCTTTGAAGAAAACACGAGAAGCTATGGCCTTGGCTGCAGAGGAATCTGGTAAATCAAAAGCAGCCAAAGAAGTTATCAAGTTACTAACCGCTCAGCTTAAAGATATGGCTGAGAGGTTACCACCTGGAGTATATGATGCTGAGAAAATGAGATCAGTTCATCTTTCAAATGGTTTGGAGTCAAATGGCGTGTACCATTTGAGTATGAATGGAGAGCGTCATTCACGATCTGATTCACTTAGCAGCTACTCCTGTGCATCTCCCACGGCATCTGATGCTGCTGCTTGGCCGGGAAGCTATGGCACAGCTCATTCATCCAGGGATCTTTCTGGAATGAATGAAAATATTCGGCAACAAGATAGAATTGACAGTCGAGATTCTAGACTTCCGAATAGTGGAGGCTCTCAGCCAGTTAACAGTAGTGCATTGGTGGCAGCTGTTGGCAAGGAGTCTGAGTCTTTACAAGATGGTGACAATAATTCCAGAGCCAAAACTTCTGTACTGGTTAATGCCACTCAAGTTGAGGCTGAATGGATTGAACAATATGAGCCTGGTGTATATATTACTCTTGTGGCTCTGCGTGATGGTACTCGGGATCTAAAACGTGTGCGCTTCAGCCGGAGAAGATTTGGAGAGCATCAAGCAGAAAACTGGTGGTCAGAGAACCGTGAGAAGGTCTATGAGAGATATAACGTTCGCAGCTCGGACAAGTCTTCAGTTTCGGGACTGTCGTCACAGAGGGCTGATGATGCAGTTTCAATAGCTTCCCAGCAACTATAG 3387 44.05 MADPFSYANADRDVEQFHKVDFILQALIALKKGAQLLKYGRKGKPKFCPFRLSSDESSLIWISSKGERSLKLASISQIIPGQRTAVFERYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEAWISGLKALIASGQGGRSKIDGWSDGGLYLDGSCELTSNSPSDSSHSVNRDNSSPEVYASSNAHISLKTSQPENYIAKSERAHVSLNQTNMQVKGSSSDVMRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEIVGDNIVKIGPERSYVTSRTDVLLPRPLESNIVLDIHHIACGVRHAALVTRHGEIFTWGEESGGRLGHGVVKDVIQPRMVESLAASNIDFVACGEFHTCAVTTTGELYTWGDGTHNAGLLGHGSDVSHWIPKRVSGPLEGLQVTSVTCGPWHTALVTSMGQLFTFGDGTFGALGHGERENISYPKEVESLSGLRTIAVACGVWHTAAVVEVIVTQSSSSISSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYDFHKVACGHSITVGLTTSGQVFSMGSTVYGQLGNPSADGKIPCLVEDKLFGESVEEVSSGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYTAAICLHKWVSSAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPDPGKPYRVCDSCYAKLIKALEASNNNRKNAMPRISGENKDRIDKADMRISKSVPSNMDLIKQLDNKAAKQGKKGDTFSLVRSSQAPPLLQFRDVVLSTAVDLRRTAPKPVVTSSGVSSRSVSPFSRKSSPPRSATPVPTASGLSFSKSITDGLKKTNDLLNHEVLKLRSQVESLKQKCELQELELQKSLKKTREAMALAAEESGKSKAAKEVIKLLTAQLKDMAERLPPGVYDAEKMRSVHLSNGLESNGVYHLSMNGERHSRSDSLSSYSCASPTASDAAAWPGSYGTAHSSRDLSGMNENIRQQDRIDSRDSRLPNSGGSQPVNSSALVAAVGKESESLQDGDNNSRAKTSVLVNATQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAENWWSENREKVYERYNVRSSDKSSVSGLSSQRADDAVSIASQQL 1128
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6308036 6317628 + Cp4.1LG13g04160.1 Cpe13g00670 479868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00670 1128 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 293 303 IPR000408 -
Cpe13g00670 1128 MobiDBLite consensus disorder prediction 792 823 - -
Cpe13g00670 1128 Gene3D - 370 469 IPR009091 -
Cpe13g00670 1128 Gene3D - 161 369 IPR009091 -
Cpe13g00670 1128 CDD PH_PLC_plant-like 23 133 - -
Cpe13g00670 1128 SUPERFAMILY FYVE/PHD zinc finger 633 708 IPR011011 -
Cpe13g00670 1128 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 25 1107 - -
Cpe13g00670 1128 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 452 462 IPR000408 -
Cpe13g00670 1128 ProSiteProfiles BRX domain profile. 1045 1100 IPR013591 -
Cpe13g00670 1128 MobiDBLite consensus disorder prediction 215 239 - -
Cpe13g00670 1128 Pfam Transcription factor regulating root and shoot growth via Pin3 1044 1099 IPR013591 -
Cpe13g00670 1128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 645 705 IPR013083 -
Cpe13g00670 1128 Pfam FYVE zinc finger 633 698 IPR000306 GO:0046872
Cpe13g00670 1128 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 25 1107 - -
Cpe13g00670 1128 Coils Coil 888 908 - -
Cpe13g00670 1128 MobiDBLite consensus disorder prediction 790 823 - -
Cpe13g00670 1128 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 637 699 IPR017455 -
Cpe13g00670 1128 MobiDBLite consensus disorder prediction 972 986 - -
Cpe13g00670 1128 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 529 580 IPR000408 -
Cpe13g00670 1128 MobiDBLite consensus disorder prediction 215 240 - -
Cpe13g00670 1128 Pfam Transcription factor BRX N-terminal domain 883 918 IPR027988 -
Cpe13g00670 1128 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 400 410 IPR000408 -
Cpe13g00670 1128 PRINTS Chromosome condensation regulator RCC1 signature 400 416 IPR000408 -
Cpe13g00670 1128 PRINTS Chromosome condensation regulator RCC1 signature 309 325 IPR000408 -
Cpe13g00670 1128 PRINTS Chromosome condensation regulator RCC1 signature 576 597 IPR000408 -
Cpe13g00670 1128 PRINTS Chromosome condensation regulator RCC1 signature 518 536 IPR000408 -
Cpe13g00670 1128 PRINTS Chromosome condensation regulator RCC1 signature 359 375 IPR000408 -
Cpe13g00670 1128 PRINTS Chromosome condensation regulator RCC1 signature 416 430 IPR000408 -
Cpe13g00670 1128 CDD FYVE_like_SF 642 695 - -
Cpe13g00670 1128 SUPERFAMILY RCC1/BLIP-II 246 634 IPR009091 -
Cpe13g00670 1128 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 477 528 IPR000408 -
Cpe13g00670 1128 SMART fyve_4 632 700 IPR000306 GO:0046872
Cpe13g00670 1128 Gene3D - 24 138 IPR011993 -
Cpe13g00670 1128 SUPERFAMILY PH domain-like 23 132 - -
Cpe13g00670 1128 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 307 358 IPR000408 -
Cpe13g00670 1128 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 359 413 IPR000408 -
Cpe13g00670 1128 Coils Coil 839 873 - -
Cpe13g00670 1128 MobiDBLite consensus disorder prediction 959 1009 - -
Cpe13g00670 1128 Pfam Pleckstrin homology domain 27 132 IPR001849 -
Cpe13g00670 1128 ProSiteProfiles PH domain profile. 100 133 IPR001849 -
Cpe13g00670 1128 Gene3D - 470 644 IPR009091 -
Cpe13g00670 1128 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 581 632 IPR000408 -
Cpe13g00670 1128 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 414 465 IPR000408 -
Cpe13g00670 1128 Pfam Regulator of chromosome condensation (RCC1) repeat 307 355 IPR000408 -
Cpe13g00670 1128 Pfam Regulator of chromosome condensation (RCC1) repeat 582 629 IPR000408 -
Cpe13g00670 1128 Pfam Regulator of chromosome condensation (RCC1) repeat 476 523 IPR000408 -
Cpe13g00670 1128 Pfam Regulator of chromosome condensation (RCC1) repeat 528 577 IPR000408 -
Cpe13g00670 1128 Pfam Regulator of chromosome condensation (RCC1) repeat 414 462 IPR000408 -
Cpe13g00670 1128 Pfam Regulator of chromosome condensation (RCC1) repeat 359 409 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00670 - - - csv:116404564 2001.48
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02108 Cpe13g00670 CCT
Cpe06g00896 Cpe13g00670 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00903 Cpe-Chr2:6486555 Cpe13g00670 Cpe-Chr13:6308036 0 dispersed
Cpe04g00897 Cpe-Chr4:8185945 Cpe13g00670 Cpe-Chr13:6308036 0 dispersed
Cpe05g00479 Cpe-Chr5:2807690 Cpe13g00670 Cpe-Chr13:6308036 0 dispersed
Cpe13g00670 Cpe-Chr13:6308036 Cpe18g00305 Cpe-Chr18:4611079 0 dispersed
Cpe01g02108 Cpe-Chr1:17822255 Cpe13g00670 Cpe-Chr13:6308036 0 wgd
Cpe13g00670 Cpe-Chr13:6308036 Cpe06g00896 Cpe-Chr6:6052283 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00670 Cpe_Chr13 FPKM 5.697258 4.848067 14.179229 15.107841 8.320871 8.788177 8.446004 25.021515 24.95863 25.167772