Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00671 ATGGGATCGCGTTTTCCCTCTCTCTCGAGCCCTAATTCTGGAAAGCTGCAGCATATATGGCGGATGATTATTGGAATCGGCAGCAGCCTCTGCTTCCCTCGCCAGGCATGCTCAAACGACCTCGTACTGAATATGGCCCTGCTTTCCCTCTCTTCAGAACCTCCATCCTCTGGATTGCCTGCCGTCCATGAGATGCACAATTATATAGCAAATGATGATCATGGTGGTCCTCGGGCTGTAAAAGATACACAAACAATTGGATCAGCATACGATCGTTATCTCCAAAGTGTGCAACTTTCTTCTTTTACTTCCGGAGAAGTACCTACCCATGGAGAAATGGGCATGGGAAGGCCTCTTGCAAACAGAATGCCAATTGCGAATAGAATGCCTGGCCCTTTATTACCCGATCCTGTTGTAATGAGTCGTCCTCTCGCTGTTTCTCCTGATCTTGCGCTTAATGGTCGAAATATTGAGTATAGTAATCATCTTCCTGTAGATTCAACGAACAGACCCATACGTGAAACCGTGCCTCTTCCTCCTGATGCCACCAACACTTTATATGTTGAAGGACTTCCTTCAGATAGTTCCAGGAGGGAAGTAGCTCATATTTTCCGCCCCTTTGTGGGATATAAAGAACTGAGACTTGTGACCAAAGAATCTAAACATCGTGGCGGGGACCCCCTAATATTATGTTTTGTGGATTTTGCAAACCCAGCCTGTGCAGCAACTGCCATGAGTGCATTGCAAGGTTATAAGATGGACGAACAAGATCCCGAGTCTAATTACTTGCGACTACAGTTCTCACGACATCCAGGTCCGAGGTCTGGCTCTGGATCTGGCGGCAAAAGGTGA 852 47.07 MGSRFPSLSSPNSGKLQHIWRMIIGIGSSLCFPRQACSNDLVLNMALLSLSSEPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPLANRMPIANRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYSNHLPVDSTNRPIRETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKR 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6317916 6321771 + Cp4.1LG13g04190.1 Cpe13g00671 479869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00671 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 254 IPR000504 GO:0003723
Cpe13g00671 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 270 IPR000504 GO:0003723
Cpe13g00671 283 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 51 283 - -
Cpe13g00671 283 CDD RRM_RBPMS_like 184 266 - -
Cpe13g00671 283 SUPERFAMILY RNA-binding domain, RBD 152 278 IPR035979 GO:0003676
Cpe13g00671 283 Gene3D - 180 271 IPR012677 -
Cpe13g00671 283 MobiDBLite consensus disorder prediction 259 283 - -
Cpe13g00671 283 PANTHER NUCLEAR SPECKLE RNA-BINDING PROTEIN A-RELATED 51 283 - -
Cpe13g00671 283 SMART rrm1_1 185 261 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00671 - - - cmax:111489771 488.804
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02109 Cpe13g00671 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00671 Cpe-Chr13:6317916 Cpe20g00901 Cpe-Chr20:7992940 6.49E-08 dispersed
Cpe14g00026 Cpe-Chr14:149609 Cpe13g00671 Cpe-Chr13:6317916 6.73E-50 transposed
Cpe01g02109 Cpe-Chr1:17830187 Cpe13g00671 Cpe-Chr13:6317916 1.22E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1253 . . . . . . . . Cmo04g02552 Cmo15g00618 . . . . Sed11g1337 . Cpe13g00671 Bhi04g01799 Tan11g1166 Cmetu03g0441 . . . . Cla08g00678 Cam08g1108 Cec08g0694 Cco08g0802 Clacu08g0814 . Cre08g0618 . . Cone17ag0793 Cone20ag0389 . . . Cme03g00377 Blo17g00216 . . Bda13g01524 . Bpe14g00337 . Bma02g00274 . . . . . Car04g02349 Car15g00561 Cpe01g02109 . . . . . . . . . . . . . . . Lsi08g00536 . Chy03g00541 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003751 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 2 3 1 1 1 1 1 2 5 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00671 Cpe_Chr13 FPKM 2.707081 3.361099 13.070024 12.204224 10.409138 14.934636 9.848948 14.112027 13.998487 14.222018