Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00675 ATGGCGGATATGGATTTCGTCGAGGGTGTTGGAGAGAGTTCTTCGCCGCCTCGAAGCTTCGGTGGCTTCTGTGCTGTCCACGATGTTCGGAACGATGTTTATACTCGGTTAATTGAGCGTGGACATGAGGAGGCAGTTTCTAATCCCCAATTTCGCGAGAACTTGGATGCGCACTTCAATCGCTTGCCTCCGAGTTATGGACTTGATATTAACATGGAGAAGGTGGAAGATGTTTTGTTACATCAAAAGCTTCTTTCCCTGGCGAAGGATCCTGAGAAGTGCCCTGTTTACCACATTCGTTTTCTGGAGCACTTAAGTACTAAGTCAGATGGCAATGATGATCACGTTTTTATTGATAGTATTCTATTAAGTGGCTCATCTAATGAAGCAGCTGATAGAAGACTTCCACTGTCGCACGAGAGAACTCAAGGAAATATAATTGACTTTGAGCCTTGTTCCAAGCTTGAGGACTTAAATTTGGATGTTGGAAAGAACTCAAAGGCCATGGGTGAGAGATATTATAAGGACAATTTTTCCAAAAGGCAGGGCAGTATTGCACATGTTCCAATACATGAAGTGATATTTTCAACGATTGACAAGCCAAAGCTTCTTAGCCAGCTTTCTGCTTTGCTTTCTGATATAGGACTTAACATCCGAGAAGCACATGTGTTTTCGACATCTGATGATTACTCCTTGGATGTATTTGTCGTGGATGGATGGCCTGTTGAGGAAACTGGTGGTTTGTATGAAGCTATGGAAAAAGCAGTGGCTAGATATGAGGGGTCATGGTCTGGTTCTTCACATTCTCATCCAGCAGTCAAGAAAACATTAGCCGCCCAGAAAAAACCAGAAGATTGGGAAATAAATAGACGATCTGAAGATCTAAATGATGATTTAGAGGATGAATTCAATCAAGAAGTGGCAATTCTCAGGAAGGTCCAGCACAAAAATGTAGTTCGTTTTATAGGTGCGTGTACAAACTCTCCACATTTGTGTATTGTAACAGAGTATATGCCAGGAGGGAGTCTTTATGATTACTTGCACAAGAATCATTGCGTGTTGAAGCTCTCACAACTGCTGAAGTTTGCTATTGATGTTTGTGAAGGAATGGAGTACTTACATTTAAATGACATTATTCATAGAGACTTGAAGACAGCAAACCTGCTAATGAACACTCAACATGTTGTGAAGGTGGCAGATTTTGGAGTTGCGCGATACCAGAGTCAAGGAGTAATGACAGCAGAAACTGGAACATACAGATGGATGGCACCTGAGGTAATAAATCATCTGCCATATGATCAGAAAGCAGATATTTTCAGTTTTGCGATTGTGCTTTGGGAACTAGTAACAGCAAAGGGACTGCGTCCAGATCTTCCCAAAAATGCTCACCCCAAATTGTTGGATTTGATGCGACGATGTTGGGATGCAGAACCTGAAAATCGGCCTCCATTTACTGAGATAAAAGTTGAACTTGAAAATCTGCTCGAAGAAGTTCAGATGTGTACAAAATAG 1512 41.73 MADMDFVEGVGESSSPPRSFGGFCAVHDVRNDVYTRLIERGHEEAVSNPQFRENLDAHFNRLPPSYGLDINMEKVEDVLLHQKLLSLAKDPEKCPVYHIRFLEHLSTKSDGNDDHVFIDSILLSGSSNEAADRRLPLSHERTQGNIIDFEPCSKLEDLNLDVGKNSKAMGERYYKDNFSKRQGSIAHVPIHEVIFSTIDKPKLLSQLSALLSDIGLNIREAHVFSTSDDYSLDVFVVDGWPVEETGGLYEAMEKAVARYEGSWSGSSHSHPAVKKTLAAQKKPEDWEINRRSEDLNDDLEDEFNQEVAILRKVQHKNVVRFIGACTNSPHLCIVTEYMPGGSLYDYLHKNHCVLKLSQLLKFAIDVCEGMEYLHLNDIIHRDLKTANLLMNTQHVVKVADFGVARYQSQGVMTAETGTYRWMAPEVINHLPYDQKADIFSFAIVLWELVTAKGLRPDLPKNAHPKLLDLMRRCWDAEPENRPPFTEIKVELENLLEEVQMCTK 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6349189 6359100 - Cp4.1LG13g04120.1 Cpe13g00675 479873

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00675 503 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 291 501 - -
Cpe13g00675 503 SMART serkin_6 240 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00675 503 PRINTS Tyrosine kinase catalytic domain signature 436 458 IPR001245 GO:0004672|GO:0006468
Cpe13g00675 503 PRINTS Tyrosine kinase catalytic domain signature 335 348 IPR001245 GO:0004672|GO:0006468
Cpe13g00675 503 PRINTS Tyrosine kinase catalytic domain signature 417 427 IPR001245 GO:0004672|GO:0006468
Cpe13g00675 503 PRINTS Tyrosine kinase catalytic domain signature 372 390 IPR001245 GO:0004672|GO:0006468
Cpe13g00675 503 Pfam Protein tyrosine and serine/threonine kinase 293 490 IPR001245 GO:0004672|GO:0006468
Cpe13g00675 503 ProSiteProfiles Protein kinase domain profile. 234 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00675 503 SUPERFAMILY Protein kinase-like (PK-like) 296 495 IPR011009 -
Cpe13g00675 503 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 291 501 - -
Cpe13g00675 503 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 13 289 - -
Cpe13g00675 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 378 390 IPR008271 GO:0004672|GO:0006468
Cpe13g00675 503 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 13 289 - -
Cpe13g00675 503 CDD STKc_MAP3K-like 291 487 - -
Cpe13g00675 503 ProSiteProfiles ACT domain profile. 192 266 IPR002912 -
Cpe13g00675 503 Gene3D Transferase(Phosphotransferase) domain 1 270 502 - -
Cpe13g00675 503 SUPERFAMILY ACT-like 191 260 IPR045865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00675 - - - mcha:111011813 885.945
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02111 Cpe13g00675 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00053 Cpe-Chr2:277513 Cpe13g00675 Cpe-Chr13:6349189 2.09E-85 dispersed
Cpe13g00675 Cpe-Chr13:6349189 Cpe14g01045 Cpe-Chr14:8766023 4.13E-124 dispersed
Cpe01g02111 Cpe-Chr1:17859216 Cpe13g00675 Cpe-Chr13:6349189 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1256 . . . . . . . . Cmo04g02557 Cmo15g00611 . . . . . . Cpe13g00675 Bhi04g01791 . . . . . Lcy10g1341 Cla08g00702 . . . . . . . . Cone17ag0791 Cone20ag0386 . . . Cme03g00342 . Blo18g00215 . Bda13g01522 Bpe02g01606 . Bma01g00863 Bma02g00273 . . . . . Car05g00693 Car15g00559 Cpe01g02111 . . . . . . . . . . . . . . . Lsi08g00545 . Chy03g00525 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004128 3 1 1 5 1 1 3 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62796 PF07714 PK_Tyr_Ser-Thr 2.30E-51 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00675 Cpe_Chr13 FPKM 2.499559 3.423809 10.456615 12.111278 5.043656 5.671552 5.53074 34.965385 35.943573 34.31237