Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00682 ATGGAAGGTAATTTATCACAAGGAGGGTTGATTCCAGGAGGAACCTCTTATGGAGGTCTCGATTTGCAAGGACCCTTTAAGGTTCATAGCCAAGCACAACACTCTCACGCCTTACACCAACAACATCATCCTCATACTCGTCAGGGATCTGCGGCCAATCCTTCCATTCAGGAGGGATTTTCACTTTCCATGGGAGTTGTACAAAATTGTGACCATGCCATGTCTTTGGTAGATTATAACAAGGGAGAAAGGTGTAAAAACTCGGCTAGTGACGAAGAGCCGAGCTTTACTGAGGATGGTATTGATGGTCATAATGAGACGAGTAAGGGGAAGAAGGGATCGGTATGGCATCGCGTGAAATGGACGGATAAAATGGTGAAGCTTCTGATTACAGCAGTGTCTTATATAGGAGATGATATTAATTCAGATTTTGATGGGGCTGGAAGAAGGAAATGCCATATTATACAGAAGAAAGGTAAATGGAAATTGATATCAAAAGTCATGGCTGAAAGGGGCTATCAAGTTTCACCTCAGCAGTGTGAGGATAAGTTTAATGATCTCAATAAGAGGTATAAGAGGCTCAATGATATAATTGGGAGAGGCACTTCTTGCAAGGTTGTTGAGAACCCTGCACTTCTTGATGTTCTTGAATATTTAACAGATAAAGAGAAGGATGATGTGAGAAAGATTTTAAACTCGAAGCAACTGTTCTATGAGGAGATGTGTTCTTATCATAATTCAAATCGACTTCATCTGCCCCATGATCCTGCTTTGCAGCGTTCTTTGCAGCTGGCTTTTAGAGCAAGGGATGATCACGATAATGACGAGCCAAGGAGACACCAAAATGATGATTTTGATGAAAACGAACATGATGAAACTGATGAACGTGATGATTTTGAGGAGAATTTTGCACCTCATGGGGACAGTAGACGATCATTCGGGGTATTAGGAGGCTCAGTGAAGAGGCTAAGACGAGACCAAGACCATGATGATACTCATGCCTGTGGCAAATCCTTGAGTTCTCATGCTCACGCACAAGCACAGTTTGCTCAAGCTGATACAGCTCACTTAGAAACTGAAGGTATGAAGGGTTCAACATCGCAAAAACAGTGGATGGAGCTTCGTTTACTTCAATTGGAAGATCAAAAGCTTCAAATTCAAGTTGAAATGTTGGAATTGGAGAAACAGAAGTTCAAGTGGGAGAGATTCAACAAGAAAAAGGACCGTGAGTTGGAAAAAATGAGGATGGTAAATGAGAGGATGAAGCTTGAAAACGAGCGCATTGCACTCGACTTAAAGCAAAAGGAAATTGGCTCGGGATTTCATTGA 1329 41.84 MEGNLSQGGLIPGGTSYGGLDLQGPFKVHSQAQHSHALHQQHHPHTRQGSAANPSIQEGFSLSMGVVQNCDHAMSLVDYNKGERCKNSASDEEPSFTEDGIDGHNETSKGKKGSVWHRVKWTDKMVKLLITAVSYIGDDINSDFDGAGRRKCHIIQKKGKWKLISKVMAERGYQVSPQQCEDKFNDLNKRYKRLNDIIGRGTSCKVVENPALLDVLEYLTDKEKDDVRKILNSKQLFYEEMCSYHNSNRLHLPHDPALQRSLQLAFRARDDHDNDEPRRHQNDDFDENEHDETDERDDFEENFAPHGDSRRSFGVLGGSVKRLRRDQDHDDTHACGKSLSSHAHAQAQFAQADTAHLETEGMKGSTSQKQWMELRLLQLEDQKLQIQVEMLELEKQKFKWERFNKKKDRELEKMRMVNERMKLENERIALDLKQKEIGSGFH 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6381999 6383327 + Cp4.1LG13g04050.1 Cpe13g00682 479880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00682 442 Coils Coil 374 396 - -
Cpe13g00682 442 MobiDBLite consensus disorder prediction 21 55 - -
Cpe13g00682 442 Coils Coil 404 426 - -
Cpe13g00682 442 MobiDBLite consensus disorder prediction 270 315 - -
Cpe13g00682 442 PANTHER F16F4.11 PROTEIN-RELATED 1 441 - -
Cpe13g00682 442 MobiDBLite consensus disorder prediction 270 286 - -
Cpe13g00682 442 Pfam Myb/SANT-like DNA-binding domain 118 244 IPR044822 -
Cpe13g00682 442 PANTHER FACTOR, PUTATIVE-RELATED 1 441 - -
Cpe13g00682 442 Gene3D - 121 193 - -
Cpe13g00682 442 MobiDBLite consensus disorder prediction 84 109 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00682 - - - csv:105435760 807.749
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02116 Cpe13g00682 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00225 Cpe-Chr3:1123388 Cpe13g00682 Cpe-Chr13:6381999 8.60E-84 dispersed
Cpe05g00503 Cpe-Chr5:2975488 Cpe13g00682 Cpe-Chr13:6381999 1.23E-15 dispersed
Cpe08g01055 Cpe-Chr8:8051528 Cpe13g00682 Cpe-Chr13:6381999 4.19E-80 dispersed
Cpe02g00877 Cpe-Chr2:6164890 Cpe13g00682 Cpe-Chr13:6381999 1.41E-12 transposed
Cpe01g02116 Cpe-Chr1:17894154 Cpe13g00682 Cpe-Chr13:6381999 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1382 . Blo12g00789 . Bda03g00389 . Bpe04g00349 Bma04g00366 . Cmo04g02563 Cmo15g00604 . . . . Sed11g1351 . Cpe13g00682 Bhi04g01778 Tan11g1141 Cmetu03g2202 . Hepe02g2794 . Lcy10g1351 Cla08g00710 Cam08g1138 Cec08g0727 Cco08g0835 Clacu08g0846 . Cre08g0647 Cone4ag1503 . Cone17ag0787 Cone20ag0381 . . . Cme03g00318 . . . . . . . . . . . . . Car04g02356 Car15g00553 Cpe01g02116 . . . . . . . . . . . . . . . . . Chy03g00512 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003875 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 3 3 1 3 1 1 2 2 0 2 2 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50430 PF13837 Myb_DNA-bind_4 3.40E-22 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00682 Cpe_Chr13 FPKM 9.253164 9.490835 1.429414 1.309759 0.382866 0.860301 0.214056 10.692664 8.619337 12.118644