Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00683 ATGTCATTCCGAAGCATACTTCGTGATGTGCGGGATGGATTTGGAAGCTTATCGAGGCGTAGTTTTGAGGTGAGGCTGTCTGGAAATTCCAGGGGTAAATCTCATGGACCAGTTCATGAGTTTCATGATGAACCTCTGCTAATTCAGACTAGTCGATGGGCTAGCCTTCCGCCCGAGTTATTGTGCGATGTGGTTCGAAGACTGGAGGCTAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTGTGTAGGTCATGGAGGGATATGTGTAAAGAAATGGTCAAAAGTCCTGAGTTCTCTGGGAAAATTACGTTCCCGATCGCCTTGAAGCAGCCTGGGCCACGTGATGGAACTATTCAATGCTTTATCAAGAGGAACAAATCTAATTTAACTTATCATCTTTATCTTTGCCTTAGTCCTGCTTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAAAGAACGAGGCGAACTACTTCTACGGAGTACGTTATATCGTTAGCCGCAGACGATATATCAAGATCGAGCAATGGTTATATCGGAAAGCTAAGATCAAATTTTCTGGGAACCAAGTTCATTATATATGATACACAGCCTCCTTACAACAGCAACCAAATCCCGACGCTTGGCCGAAGCCGAAGATTCTACTCGAAAAAGGTCTCGCCGAAGGTCCCAGCTGGAAGCTACAGCATTGCACAAATTGCATACGAGTTGAACGTATTAGGTACAAGGGGACCCCGGAGGATGAACTGCACCATGTACTCAATCCCCAATTCATCTCTTGAGCCAGGTTGTTCGGTTCCAGGCCAGCCCGAGCTCAATCCTCGTCCCCTCGAAGACTCATTTCGTAGCATGTCATTCTCCAAGTCGATCGATCATTCCACCGAGTTCAGCAGCTCCCGCTTCTCTGATGTTGCAGGAATGGTTGCTAACGAAGATGGCGAGGGGAAGGATCGACCCTTGGTTCTTCGGAACAAGGCGCCTAGATGGCACGAGCAGTTGCATAAGGACATGTTTACGATGGATTATCGATATCCACTGTCGGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACTAAATTG 1110 46.49 MSFRSILRDVRDGFGSLSRRSFEVRLSGNSRGKSHGPVHEFHDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEMVKSPEFSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMNCTMYSIPNSSLEPGCSVPGQPELNPRPLEDSFRSMSFSKSIDHSTEFSSSRFSDVAGMVANEDGEGKDRPLVLRNKAPRWHEQLHKDMFTMDYRYPLSAFQAFAICLSSFDTKL 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6388206 6393078 + Cp4.1LG13g04040.1 Cpe13g00683 479881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00683 370 PANTHER TUBBY-RELATED 1 341 - -
Cpe13g00683 370 Pfam F-box domain 53 99 IPR001810 GO:0005515
Cpe13g00683 370 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cpe13g00683 370 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cpe13g00683 370 PRINTS Tubby superfamily signature 330 349 IPR000007 -
Cpe13g00683 370 PRINTS Tubby superfamily signature 351 370 IPR000007 -
Cpe13g00683 370 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cpe13g00683 370 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 341 - -
Cpe13g00683 370 Gene3D Tubby Protein; Chain A 341 367 IPR025659 -
Cpe13g00683 370 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 342 370 - -
Cpe13g00683 370 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515
Cpe13g00683 370 SUPERFAMILY Tubby C-terminal domain-like 102 370 IPR025659 -
Cpe13g00683 370 Gene3D Tubby Protein; Chain A 113 340 IPR025659 -
Cpe13g00683 370 Pfam Tub family 114 341 IPR000007 -
Cpe13g00683 370 Gene3D - 48 100 - -
Cpe13g00683 370 PANTHER TUBBY-RELATED 342 370 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g02118 Cpe13g00683 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00683 Cpe-Chr13:6388206 Cpe14g00302 Cpe-Chr14:1776558 0 dispersed
Cpe01g02118 Cpe-Chr1:17906672 Cpe13g00683 Cpe-Chr13:6388206 5.51E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50431 PF01167 Tub 2.40E-67 CL0395 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00683 K19600 - cpep:111809239 691.804