Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00692 ATGAAAACCGCGTATCCTTCACCTGGCGCCAAGCCCAATCGCGTCGAATCCAGAATCATCAAGGATCAACATATTGAAGGACTGCCACATTACAAAGATATCAAACAAAATGAATTCTGTTATCGAAAACACAAGAAGCAGAAGGAGGAGGATATTGCCGTCTGTGTCTGCAAATTTGACGCTAACGATAACGATAGTGGTTGTGGGGAAGGGTGCTTGAATGTACTGACCAGCACTGAGTGTACTCCTGGATATTGTCCCTCTGGTGTTCATTGCAGAAATCAGAGGTTTCAGAAATGTGAGTATGCAAGAACAAAGTTGTTCAACACTGAAGGTCGTGGGTGGGGCCTTTTAGCTGATGAGAATATAAAGAGTGGACAATTTATTATTGAATATTGTGGGGAAGTTATATCTTGGAAGGAAGCAAAACGGAGATCCCACACTTATGAAAATCAGGGACTCAAAGATGCTTACATCATCTCACTCAATGCCTCTGAATCAATTGATGCAACTAGGAAGGGAAGTCTTGCTAGATTTATAAATCATTCCTGTCCAAACTGTGAGACGAGGAAGTGGAATGTGTTGGGTGAAATAAGGGTTGGAATATTTGCAAAGCAAGACATTTCCATTGGGACTGAATTGTCATATGATTATAATTTCGAATGGTATGGAGGTGCCAAGGTTCGCTGCCTCTGTGGTGCAAGCAGCTGTTCAGGATTCCTTGGAGCCAAGTCTCGTGGGTTCCTGGAGGATACCTATTTGTGGGAAGATGACGATGATAGGTATTCTGTTGAGAAAATTCCACTGTACGATTCTGCAGAGGATGAGCCATTCGTTAAGCTCCACACTGTATTAAATAACCCATATTCTGAGTTTGAGGGTTATCTGAAAAATGAGAACCCAATGATCTTGGACGATAATTTGGGAGCTGAACAGCAGCTGGTATCCACTGCATTAATTGATACCTCGAAGAATTCAGTTCAATTACAAAATATAGTTGTGGGAGAAATTAAAAATGAAGCAAAAGAGGAGCCAGAAGACCATCCACAGAATACACAGCAGACCTTTTCCCAGCAGAATGCAATGATATCTCGAATCCGAAGTAACACCGCATGCCGTAATTATCGCATTGGACCTGGACCTGCGGCCAAAAAACGAGCAAGAAACTTAACGAATGGAAGGACGAAAAATTTTACCCTGAAGCAAGTAGATGCAAAATATGTTGCTCGATTGTTAGAGTTGAAGGAAGCACAAGAAGAAGTCTTACAGTACGAGGAAACGAAGAACAAAGCTACCTCCGAACTTGATTTGTTGTACAATGAAATACGACCCGCCATAGAAGAATATGAGAGGGACAGCCAAGACAGTGTAGCTACCAGTGTTGCGGAAAAGTGGATAGAAGCAAGCTGTTTGAAACTGAAGGCGGAATTTGATCTGTATTCTTCTATAGTCAGAAATGTTGCTTGCACTCCTTTAAGGTCAGGTGTCTCTACTGAACCTCAACCTCTTGAAGTGGATGGCGACAACGACCTGAAATTATTAACTAATTAG 1551 41.97 MKTAYPSPGAKPNRVESRIIKDQHIEGLPHYKDIKQNEFCYRKHKKQKEEDIAVCVCKFDANDNDSGCGEGCLNVLTSTECTPGYCPSGVHCRNQRFQKCEYARTKLFNTEGRGWGLLADENIKSGQFIIEYCGEVISWKEAKRRSHTYENQGLKDAYIISLNASESIDATRKGSLARFINHSCPNCETRKWNVLGEIRVGIFAKQDISIGTELSYDYNFEWYGGAKVRCLCGASSCSGFLGAKSRGFLEDTYLWEDDDDRYSVEKIPLYDSAEDEPFVKLHTVLNNPYSEFEGYLKNENPMILDDNLGAEQQLVSTALIDTSKNSVQLQNIVVGEIKNEAKEEPEDHPQNTQQTFSQQNAMISRIRSNTACRNYRIGPGPAAKKRARNLTNGRTKNFTLKQVDAKYVARLLELKEAQEEVLQYEETKNKATSELDLLYNEIRPAIEEYERDSQDSVATSVAEKWIEASCLKLKAEFDLYSSIVRNVACTPLRSGVSTEPQPLEVDGDNDLKLLTN 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6459993 6472625 + Cp4.1LG13g03890.1 Cpe13g00692 479890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00692 516 SMART PostSET_3 226 242 IPR003616 -
Cpe13g00692 516 Gene3D SET domain 11 252 IPR046341 -
Cpe13g00692 516 SUPERFAMILY SET domain 40 239 IPR046341 -
Cpe13g00692 516 Coils Coil 414 441 - -
Cpe13g00692 516 ProSiteProfiles AWS domain profile. 50 101 IPR006560 GO:0005634|GO:0018024
Cpe13g00692 516 SMART shorttest3 50 102 IPR006560 GO:0005634|GO:0018024
Cpe13g00692 516 SMART set_7 103 225 IPR001214 GO:0005515
Cpe13g00692 516 Pfam AWS domain 63 100 IPR006560 GO:0005634|GO:0018024
Cpe13g00692 516 PANTHER SET DOMAIN PROTEINS 22 453 - -
Cpe13g00692 516 Pfam SET domain 114 219 IPR001214 GO:0005515
Cpe13g00692 516 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 22 453 - -
Cpe13g00692 516 ProSiteProfiles SET domain profile. 98 219 IPR001214 GO:0005515
Cpe13g00692 516 ProSiteProfiles Post-SET domain profile. 226 242 IPR003616 -
Cpe13g00692 516 MobiDBLite consensus disorder prediction 495 516 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00692 - - - csv:101222397 925.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01160 Cpe-Chr5:7881921 Cpe13g00692 Cpe-Chr13:6459993 1.20E-11 dispersed
Cpe13g00643 Cpe-Chr13:6125977 Cpe13g00692 Cpe-Chr13:6459993 7.31E-51 dispersed
Cpe13g00692 Cpe-Chr13:6459993 Cpe18g00585 Cpe-Chr18:6266661 1.93E-37 dispersed
Cpe13g00692 Cpe-Chr13:6459993 Cpe01g02076 Cpe-Chr1:17594309 2.04E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1347 . . Bda01g00865 . . . . . . . . . . . . . Cpe13g00692 Bhi04g02533 . . . . . . . . . . . . . . . . . . . . . . Blo18g00148 . . Bpe02g01103 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00567 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010525 1 2 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50432 PF00856 SET 1.10E-18 No_clan Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00692 Cpe_Chr13 FPKM 1.828283 1.451244 0.310428 0.102467 0.0 0.0 0.0 0.792586 0.815037 0.322015