Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00693 ATGCAACCCACCCCAATCCTGATTTTCGCATCCATCGCCAGTTTCTCCGTCGCAACCCTATTCCTCTTCTGCGTCTTCTTACTCTTCCGAAAGCTCAAATCGAAGCATCGAACTCCCCGCCAACAGCAAAATCGCAACCGCAATTTGGATCTCTCTTCCATCTCCGTCGATGAGAGCGCCTCCTTCGATCCTTCACTTCGAATCTCCATGGCCGAACTCCGAGCCGCTACCAAAAATTTCAGCAACGATTTAATCGTCGGCGATGGCTCTTTCGGCCTCGTCTACAAGGCTCGCCTCTCCTCCGGCGCTACTGTTGCCATCAAGAAGCTTAATCCCGACGCTTTCCAAGGATTCCGAGAATTCCGAGCCGAGATGGAGACTCTCGGAAAACTCCGCCATCGGAACATCGTCAAAATGTTAGGATACTGTATTTCCGGCTCCGATAGGCTTCTGATCTACGAATTCATTGAGAGAGGAAGTCTGGATAATTGCTTGAACGGATTGACGGGGGCCACGTTGAAGGCTGACGTGTACAGTTTTGGGATTTTAATGTTCGAGGTTGCTATGGGCCGGAGGCCCAATTTACCTATGGTATTGGACGACAAAGAAGTGGGCTTAATAGAATGGGCTCGGATTTTAGTGGCCCAAAACAGACACATGGAAATGGTCGATGCTAGCATTTCGAGGGAGGAGCTTATGGAGGCCAATGTGAAGGAGTATTTTAGGATTGCTTGTTTGTGCACGAGTGAGAGGTCCAAGGAAAGGCCTCCTATGTCTAATGTTGTCGAGTTTCTGGATCGAATTTGCGACGTGAAGTTGTGTGATGATGATAACGGCGAGTAG 843 49.35 MQPTPILIFASIASFSVATLFLFCVFLLFRKLKSKHRTPRQQQNRNRNLDLSSISVDESASFDPSLRISMAELRAATKNFSNDLIVGDGSFGLVYKARLSSGATVAIKKLNPDAFQGFREFRAEMETLGKLRHRNIVKMLGYCISGSDRLLIYEFIERGSLDNCLNGLTGATLKADVYSFGILMFEVAMGRRPNLPMVLDDKEVGLIEWARILVAQNRHMEMVDASISREELMEANVKEYFRIACLCTSERSKERPPMSNVVEFLDRICDVKLCDDDNGE 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6474340 6475485 + Cp4.1LG13g03910.1 Cpe13g00693 479891

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00693 280 SUPERFAMILY Protein kinase-like (PK-like) 51 264 IPR011009 -
Cpe13g00693 280 ProSitePatterns Protein kinases ATP-binding region signature. 86 109 IPR017441 GO:0005524
Cpe13g00693 280 Gene3D Phosphorylase Kinase; domain 1 38 152 - -
Cpe13g00693 280 PANTHER OS01G0253100 PROTEIN 1 167 IPR045271 GO:0004714|GO:0006468
Cpe13g00693 280 PANTHER RECEPTOR SERINE-THREONINE PROTEIN KINASE 1 167 - -
Cpe13g00693 280 Pfam Protein tyrosine and serine/threonine kinase 85 166 IPR001245 GO:0004672|GO:0006468
Cpe13g00693 280 Pfam Protein tyrosine and serine/threonine kinase 172 265 IPR001245 GO:0004672|GO:0006468
Cpe13g00693 280 PANTHER OS01G0253100 PROTEIN 165 267 IPR045271 GO:0004714|GO:0006468
Cpe13g00693 280 ProSiteProfiles Protein kinase domain profile. 80 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00693 280 PANTHER RECEPTOR SERINE-THREONINE PROTEIN KINASE 165 267 - -
Cpe13g00693 280 Gene3D Transferase(Phosphotransferase) domain 1 153 275 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00693 - - - csv:101222159 273.478
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02126 Cpe13g00693 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00693 Cpe-Chr13:6474340 Cpe04g00850 Cpe-Chr4:7847421 1.41E-39 dispersed
Cpe01g02126 Cpe-Chr1:17944071 Cpe13g00693 Cpe-Chr13:6474340 5.31E-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1346 . . . . Bpe02g00205 . . Bma01g02515 . Cmo15g00590 . . . . . . Cpe13g00693 Bhi04g01757 . . . . . Lcy10g1364 . . . . . . . . . . . . . . Cme03g00296 . . . . . . . . . . . . . Car04g02364 Car15g00542 Cpe01g02126 . . . . . . . . . . . . . . . Lsi08g00568 . Chy03g00493 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010752 0 1 0 1 1 0 2 0 0 1 1 1 2 1 0 1 0 0 2 0 1 1 1 0 1 1 1 1 0 1 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62797 PF07714 PK_Tyr_Ser-Thr 5.90E-06 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00693 Cpe_Chr13 FPKM 3.485313 1.867593 0.432658 0.0 0.0 0.0 0.0 1.013785 1.444206 1.488448