Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00698 ATGATGGCTAGCTCATCTGAAAGGTGGATAGATCGTCTCCAGTTTTCGTCCTTGTTTTGGACTCCGCCTCGAGACGAGCAACAAAGAAAAGCTGAAATCACTACTTATGTTGAGTGCTTGGGTCAGTTCACATCAGAACAATTTCCGGAGGATATTGCAGAGTTAATACGTAGCCATTATCCATGGAAGGAAAAGCGCCTCATTGATGATGTCTTGGCAACTTTTGTTCTTCATCATCCGGAGCACGGACATGCGGTTATTCTTCCAATTATTTCTTGTATTATTGATGGTTCTATGGTGTATTGCAAGAGTGGTTCTCCCTTTTCATCTTTCATATCCTTATTCTGCCCGGACGCAGAGCACGATTACTCTGAACAGTGGGCTCTGGCATGTGGTGAGATCTTGAGAATTTTGACTCATTATAATCGTCCCATATATAAGACGGAACAACAGAATATGGAAGGAGAAAGAAGTGGTTGTGACACCGATACAACAACCAGTGACTCTAGCAATGTGGCACCCAGCCAGACACCTTCGAATCAGGAAAGGAAGCCCTTAAGGCCCCTTTCTCCGTGGATCACAGACATATTGCTTGCAGCACCTCTAGGCATCAGAAGCGACTACTTCCGCTGGTGTAGTGGTGTTATGGGAAAATATGCAGCTGGAGAACTAAAGCCGCCTACAACTGCTACATCTCGTGGGTCTGGAAAGCATCCACAACTTGTACCGTCAACTCCAAGATGGGCGGTTGCTAATGGTGCTGGTGTTATATTAAGTGTATGTGATGAAGAAGTCGCTCGTTATGAGACTGCCACTTTAACAGCAGCAGCTGTTCCTGCACTTTTACTTCCTCCACCCACTACAGCCTTGGATGAGCATCTAGTTGCTGGCCTACCTGCTTTAGAGCCTTATGCACGTTTATTTCACAGGTATTATGCTATCGCTACTCCAAGTGCTACTCAAAGACTTCTTCTTGGGCTTCTAGAAGCACCTCCTTCATGGGCTCCCGATGCTCTTGATGCGGCTGTTCAGCTTGTAGAACTTCTTCGGGCTGCTGAAGACTACGCGTCTGGAATAAGACTTCCTAGGAACTGGATGCACTTGCATTTCTTACGTGCCATAGGAACTGCAATGTCAATGCGAGTCGGTATTGCTGCTGACGCTGCAGCAGCGTTACTTTTCCGGATACTCTCCCAACCTGCATTGCTTTTTCCTCCTTTGAGGCAAGTTGAGGGAGCTGAAATTCAACACGAACCATTGGGTGATTATATATCGTCCTACCGGAGACAGATAGAAGTTCCAGCAGCAGAAGCGACAATTGAAGCAACTGCCCAAGGGATTGCATCCATGCTTTGTGCCCATGGTCTGGAAGTTGAATGGAGAATCTGTACCATTTGGGAAGCTGCTTATGGCTTGATTCCGTTAAGTTCTTCTGCAGTTGATCTTCCAGAAATTGTTGTTGCAACGCCACTACAACCTCCCCTATTGTCTTGGAATCTGTACATACCACTTCTTAAGGTCCTTGAATATCTTCCTCGTGGCAGTCCATCCGAAGCATGTCTGATGAAGATATTTGTTGCTACGGTAGAAGCGATTCTTCAAAGAGCATTTCCATCCGAGACTTCATCAGAGCGTACAAGGAAACTCAAATATCTTTCTGGAATTGGCTGTGCCTCTAAAAACCTTTCACTATCGGAGCTCCGGATGATGGTTCACTCTCTTTTCTTAGAATCGTGTGCCTCTGAAGAGCTTGCTTCACGTTTACTTTTTATTGTGTTAACTGTTTGTGTAAGTCATGAAGCTCAATCGAACGGAAGAAAGAAAAGAAGAAGCGATAGTGGGAATTTTCAGGAAGAAGAAAGGGTTGAGCCCGATCAAGACATGTCCAGAAAAAGAAAAGAAACAAAAAGTAGGATGAATAAACAAGGACCTGTATCAGCTTTTGATTCTTATGTTCTTGCTGCTGTTTGTGCTCTTGCTTGTGAACTGCAGCTATTTCCATTGATGTCACGGGGAAGGAAGCATTCGAGTTTCAAAAGTTTGCAAGATGTGGCCAAGTTAGTCAAAATAAATGGATCTTCTTTTGAACTTCAAAGTAGTATTGACTCGGCAATTCGCCATACTCACAGAATCTTATCAATTTTGGAGGCTCTCTTTTCCCTGAAGCCTTCATCTCTCGGAACATCCTGGAGTTACAGTTCAAATGAAATAGTTGCTGCTGCTATGGTTGCTGCTCATGTTTCAGAACTATTTCGACGGTCAAGAGCTTGCATGCATGCGCTCTCCGTTTTGATGCGGTGCAAGTGGGACGAAGAAATTTACACCCGGGCTTCATCGCTTTACAACCTCATTGATATTCACAGCAAAGCTGTTGCATCTATTGTCAATAGGGCTGAGCCATTAGAAGTGCACTTAGTGCATGCACCAACTTCTGAATACTCTTGTGTGTCTTCAGCAGGCCGAAAGCCAACTCAACACGATGACCATGTCTACTTCGAGACTGGACAGCAATCTGTCCCTAAATCCGAAGAGTCATGCCATGTTAGATCGAAACTTTCATTTGAAAGAGCATCAGATTCAAATGTTGACTTGGAAAACACGTTGGGAAAGCGTATAGCGAGTTTCCAGTTAGATGCTTCTGAACTCGCAAATTTTCTCACAATTGATAGGCATATAGGATTCAATGGATGTGCACAAATTCTCTTGAGATCAGTTCTGGCAGAGAAGCAAGAGTTATGTTTCTCCGTTGTTTCACTTTTATGGCACAAGTTAATTGCGACCCCCGAAATTCAACCCAGTGCGGAAGGCACGTCTGCTCTGCAGGGATGGAGACAGGTAGTCGATGCATTATGCAATGTTGTATCTGCATCCCCAGCAAAAGCAGCTGCAGCTGTTGTGCTTCAGGCTGATAAAGAATTCCAGCCTTGGATTGCTAAAGATGATAACCAAGGGCAGAAGATGTGGAGAATCAACCAGCGGATCATCAAATTGATTGTTGAACTCATGAGAAATCATGATACGCTGGAATCATTAATAACTTTAGCAAGCGCATCCGACCTTCTTTTACGTGCTACAGATGGAATGCTGGTAGACGGAGAAGCTTGCACTTTGCCCCAACTCGAGCTCCTGGAAGCAACAGCTCGAGCAGTTCGACCTGTGCTGGAGTTGGGAGAATCCGGGTTGTCCATCGCAGACGGTCTTGCCAACCTTTTGAAGTGTCGCCTACCAGCTACGGTTCGGTGCCTTTCTCATCCAAGTGCACATGTCCGTACTTTGAGTACATCAGTTCTTCGCGATATTCTGCAAACTGGTTCATATGTCGGTAGATCCGCACATAAGAACATAAACGGTGTTCACAGTTCATCTTTTCAGTACTTTGACATGGAAGCCATTAACTGGAAAGATGACCTTGAAAAATGCTTAACTTGGGAAGCTCATAGTCGACTCGTAACTGGAATGCCCATCGAGGGTCTTCACGTTGCTGCCAAGGAATTAGGGTGCTCTATTTCTTTGTGA 3516 44.85 MMASSSERWIDRLQFSSLFWTPPRDEQQRKAEITTYVECLGQFTSEQFPEDIAELIRSHYPWKEKRLIDDVLATFVLHHPEHGHAVILPIISCIIDGSMVYCKSGSPFSSFISLFCPDAEHDYSEQWALACGEILRILTHYNRPIYKTEQQNMEGERSGCDTDTTTSDSSNVAPSQTPSNQERKPLRPLSPWITDILLAAPLGIRSDYFRWCSGVMGKYAAGELKPPTTATSRGSGKHPQLVPSTPRWAVANGAGVILSVCDEEVARYETATLTAAAVPALLLPPPTTALDEHLVAGLPALEPYARLFHRYYAIATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEDYASGIRLPRNWMHLHFLRAIGTAMSMRVGIAADAAAALLFRILSQPALLFPPLRQVEGAEIQHEPLGDYISSYRRQIEVPAAEATIEATAQGIASMLCAHGLEVEWRICTIWEAAYGLIPLSSSAVDLPEIVVATPLQPPLLSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVEAILQRAFPSETSSERTRKLKYLSGIGCASKNLSLSELRMMVHSLFLESCASEELASRLLFIVLTVCVSHEAQSNGRKKRRSDSGNFQEEERVEPDQDMSRKRKETKSRMNKQGPVSAFDSYVLAAVCALACELQLFPLMSRGRKHSSFKSLQDVAKLVKINGSSFELQSSIDSAIRHTHRILSILEALFSLKPSSLGTSWSYSSNEIVAAAMVAAHVSELFRRSRACMHALSVLMRCKWDEEIYTRASSLYNLIDIHSKAVASIVNRAEPLEVHLVHAPTSEYSCVSSAGRKPTQHDDHVYFETGQQSVPKSEESCHVRSKLSFERASDSNVDLENTLGKRIASFQLDASELANFLTIDRHIGFNGCAQILLRSVLAEKQELCFSVVSLLWHKLIATPEIQPSAEGTSALQGWRQVVDALCNVVSASPAKAAAAVVLQADKEFQPWIAKDDNQGQKMWRINQRIIKLIVELMRNHDTLESLITLASASDLLLRATDGMLVDGEACTLPQLELLEATARAVRPVLELGESGLSIADGLANLLKCRLPATVRCLSHPSAHVRTLSTSVLRDILQTGSYVGRSAHKNINGVHSSSFQYFDMEAINWKDDLEKCLTWEAHSRLVTGMPIEGLHVAAKELGCSISL 1171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6496126 6504654 - Cp4.1LG13g03850.1 Cpe13g00698 479896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00698 1171 MobiDBLite consensus disorder prediction 149 184 - -
Cpe13g00698 1171 MobiDBLite consensus disorder prediction 223 244 - -
Cpe13g00698 1171 PANTHER PROTEIN GIGANTEA 2 1170 IPR026211 GO:2000028
Cpe13g00698 1171 MobiDBLite consensus disorder prediction 604 634 - -
Cpe13g00698 1171 PRINTS Protein GIGANTEA signature 5 23 IPR026211 GO:2000028
Cpe13g00698 1171 PRINTS Protein GIGANTEA signature 123 147 IPR026211 GO:2000028
Cpe13g00698 1171 PRINTS Protein GIGANTEA signature 183 203 IPR026211 GO:2000028
Cpe13g00698 1171 PRINTS Protein GIGANTEA signature 203 221 IPR026211 GO:2000028
Cpe13g00698 1171 PRINTS Protein GIGANTEA signature 232 250 IPR026211 GO:2000028
Cpe13g00698 1171 PRINTS Protein GIGANTEA signature 250 271 IPR026211 GO:2000028
Cpe13g00698 1171 PRINTS Protein GIGANTEA signature 277 295 IPR026211 GO:2000028
Cpe13g00698 1171 PRINTS Protein GIGANTEA signature 301 321 IPR026211 GO:2000028
Cpe13g00698 1171 PRINTS Protein GIGANTEA signature 326 345 IPR026211 GO:2000028
Cpe13g00698 1171 PRINTS Protein GIGANTEA signature 345 365 IPR026211 GO:2000028
Cpe13g00698 1171 PRINTS Protein GIGANTEA signature 377 399 IPR026211 GO:2000028
Cpe13g00698 1171 PRINTS Protein GIGANTEA signature 449 472 IPR026211 GO:2000028
Cpe13g00698 1171 PRINTS Protein GIGANTEA signature 509 530 IPR026211 GO:2000028
Cpe13g00698 1171 MobiDBLite consensus disorder prediction 604 641 - -
Cpe13g00698 1171 PANTHER PROTEIN GIGANTEA-LIKE ISOFORM X1 2 1170 - -
Cpe13g00698 1171 MobiDBLite consensus disorder prediction 149 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00698 K12124 GI; GIGANTEA - csv:101220984 2105.49
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02131 Cpe13g00698 CCT
Cpe06g00912 Cpe13g00698 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02131 Cpe-Chr1:17964962 Cpe13g00698 Cpe-Chr13:6496126 0 wgd
Cpe13g00698 Cpe-Chr13:6496126 Cpe06g00912 Cpe-Chr6:6310863 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1318 . . . . Bpe02g00199 . . Bma01g02522 Cmo04g02577 Cmo15g00583 . . . . Sed11g1376 Cpe06g00912 Cpe13g00698 Bhi04g01748 Tan11g1103 Cmetu03g1200 . Hepe02g2812 . . . . . . . . . Cone4ag1468 . Cone17ag0770 Cone20ag0365 . . . . . Blo18g00145 . Bda13g01418 Bpe02g01107 Bpe14g00439 . . . . . . . Car04g02369 Car15g00537 Cpe01g02131 . Bhi09g01545 Tan01g3069 . . . . . Cla09g00952 Cam09g1003 Cec09g1006 Cco09g1018 . . . . . Chy03g00490 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001222 2 6 3 2 3 2 3 2 2 2 2 2 3 1 2 2 2 3 3 2 2 2 2 2 1 2 2 8 6 1 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00698 Cpe_Chr13 FPKM 37.634407 38.369926 23.973087 20.582935 35.181591 33.019444 38.288979 2.477186 2.080774 2.683619