Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00699 ATGAGAGATTCACCTGATATTTTGGTGCACGAGGTGAAAGACGCTAAAAATAAGGCCGTCAAGTTTTCTGCAACACTTAATGTCGGAGAAAATAAGGAGTTTGATTTTGTACGTACCTTATATGGTAGTTTAAGTCTCAGTGCACAATATGCAGAGACATGCTTGAATGATAAAGGGGCTATAGCTGGAGGTGCTGCTGGCCTCGTTGTAGAAGCTGCTCTATATCCAATTGATACAGTAAAAACTCGTCTACAGGCTGTTCATGGAGGAGGAAAAGTTGTACTAAAGGGTCTTTATTCTGGATTGGCTGCAAATCTTGTTGGGATGTTACCTGCCACTGCCATTTTCGTTGGTGTATATGAACCTACCAAGCAGAAATTGCTCAATTCTCTCCCCGAAAACCTCAATGCTTTAGCTCATCTGACTGCAGGTGTCATAGGAGGAGTGGCTTCATCGATCATCCGTGTACCAACAGAGGTTGTTAAGCAAAGGATGCAGACTAGCCACTTTGCATCTACATCGAATGCTGTCCACGTTATTGTTTCAAGGGAAGGTTTTAAAGGCCTTTATGCGGGGTATGGATCTTTCTTACTACGAGATTTGCCATTTGATGCCATTCAGTTCTGCATTTATGAACAACTTAGGATAGGGTACAAGCTAGCAGCGCAAAGAGATCCAAATGACCCTGAGAATGCTATAATTGGTGCCTTTTCTGGTGCTATTACTGGGGCTATAACCACTCCTCTTGATGTGATCAAAACTAGATTAATGATTCAGGGATCAAGTAGTCAATATCAAGAAGCGCGGCCAGGTTTGGAACTGGGGCGTTCAACGACTTGTCTTCTTATATTGATTCTAGAGGTATCAAGAAACCCTTGA 879 42.55 MRDSPDILVHEVKDAKNKAVKFSATLNVGENKEFDFVRTLYGSLSLSAQYAETCLNDKGAIAGGAAGLVVEAALYPIDTVKTRLQAVHGGGKVVLKGLYSGLAANLVGMLPATAIFVGVYEPTKQKLLNSLPENLNALAHLTAGVIGGVASSIIRVPTEVVKQRMQTSHFASTSNAVHVIVSREGFKGLYAGYGSFLLRDLPFDAIQFCIYEQLRIGYKLAAQRDPNDPENAIIGAFSGAITGAITTPLDVIKTRLMIQGSSSQYQEARPGLELGRSTTCLLILILEVSRNP 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6511488 6518346 + Cp4.1LG13g03920.1 Cpe13g00699 479897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00699 292 Pfam Mitochondrial carrier protein 60 129 IPR018108 -
Cpe13g00699 292 Pfam Mitochondrial carrier protein 230 270 IPR018108 -
Cpe13g00699 292 Pfam Mitochondrial carrier protein 135 215 IPR018108 -
Cpe13g00699 292 PANTHER S-ADENOSYLMETHIONINE CARRIER 1, CHLOROPLASTIC/MITOCHONDRIAL 7 267 - -
Cpe13g00699 292 Gene3D Mitochondrial carrier domain 57 280 IPR023395 -
Cpe13g00699 292 ProSiteProfiles Solute carrier (Solcar) repeat profile. 135 217 IPR018108 -
Cpe13g00699 292 SUPERFAMILY Mitochondrial carrier 59 263 IPR023395 -
Cpe13g00699 292 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 7 267 - -
Cpe13g00699 292 PRINTS Mitochondrial carrier protein signature 59 72 IPR002067 GO:0055085
Cpe13g00699 292 PRINTS Mitochondrial carrier protein signature 72 86 IPR002067 GO:0055085
Cpe13g00699 292 PRINTS Mitochondrial carrier protein signature 235 257 IPR002067 GO:0055085
Cpe13g00699 292 PRINTS Mitochondrial carrier protein signature 190 208 IPR002067 GO:0055085
Cpe13g00699 292 ProSiteProfiles Solute carrier (Solcar) repeat profile. 58 126 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00699 K15111 SLC25A26; solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26 - csv:101220750 423.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02132 Cpe13g00699 CCT
Cpe01g02132 Cpe13g00699 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00338 Cpe-Chr5:1882941 Cpe13g00699 Cpe-Chr13:6511488 1.44E-24 dispersed
Cpe05g01093 Cpe-Chr5:7254624 Cpe13g00699 Cpe-Chr13:6511488 6.43E-67 dispersed
Cpe13g00699 Cpe-Chr13:6511488 Cpe18g00704 Cpe-Chr18:6965984 5.10E-29 dispersed
Cpe01g02132 Cpe-Chr1:17979988 Cpe13g00699 Cpe-Chr13:6511488 2.81E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1331 . . . . . . . . Cmo04g02578 Cmo15g00582 . . . . Sed05g0790 . Cpe13g00699 Bhi04g01747 Tan11g1101 Cmetu03g1735 . Hepe02g2813 . Lcy10g1370 Cla08g00747 Cam08g1174 Cec08g0764 Cco08g0871 Clacu08g0880 . Cre08g0682 . . . Cone20ag0664 . . . Cme03g01052 . . . . . . . . . . . . . Car04g02371 Car15g00536 Cpe01g02132 . . . . . . . . . . . . . . . Lsi08g00573 . Chy03g00489 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002717 3 2 1 1 1 1 3 1 1 2 1 1 3 2 2 2 2 2 3 1 2 2 2 2 2 2 2 3 2 2 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00699 Cpe_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0