Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00706 ATGGCGGCTATGATTCCGGCACCAGTGATTTCTGCTCCGATTCAAACGGCGGTCATTCCTCCTCCGGTGGGATCTGTGCCCACTGGAGAAGTTTTTTTGAGTTCTTCATTGTATGTGGGCGATCTGGAGCTTAACGTGAACGAGGCACAGCTTTTGGAACTGTTTAGCCGTGTGGCTCAGGTTGTCTCCCTTAGGGTTTGCAGGGATCAGACACGCAGAGTATCGCTTGGATATGGTTATGTTAATTTTAGCAATCATCAAGATGCTATGACTGCCATGGAACACTTGAATTTCACCTCTATTAACGGGAAGCCTATCAGGATTATGATCTCAAATCGAGATCCTAGCATTCGGAAAAGTGGCTATGCAAATGTTTTTATCAAAAATCTGGACGCATCAATTGATAACAAAGCATTGCATGATACATTTGCTTCTTTCGGTACTGTTCTTTCTTGTAAAGTTGCGCTTGATAGCAATGGTCAATCAAAAGGTTATGGATTCGTGCAATTTGATACCAAGGAAGCAGCCGAAAGTGCCATAATAAAGTTGAATGGCATGCTCCTCAATGACAAGCAAGTATATGTTGGCCATTTCATTCGACGCCAGGAAAGGATGCGAGCAAATGGATTACAATTTACTAATGTTTACGTAAAAAATTTACCAGAAAATATGATGGACGATGGCCTAAAAAGTCTGTTTGGTGTACATGGTACCATTACTAGTGCAGTTGTTAAGACCGATTCAAATGGAAAGTCCAAAGGTTTTGGTTTTGTGAACTTTGAGAGCACAGACTCTGCTGCTGCTGCAGTTGAAAAGCTGAATGGTACCCTCATTGGTGAGGACAAGATTTTGTACGTAGGCAAGGCTCAAAGGAAAGCAGAAAGGGAGGCTGAATTGAAAGAAAAATTCGAACGGGATAGAAAGATCAGATTTGATAAATTACAAGGCGCAAATTTGTACATCAAAAATCTTGATGACCATATTGATGATGAGAAGCTTAAAGAATTATTCTCCGAGTATGGAACAATCACATCATGCAAGGTTATGCTTGACGAAAATGGAGTGAGCAAGGGGACTGGTTTTGTTGCCTTTTCTTCACCAGATGATGCAGCTAGAGCCACACAGTTTGCACAGATCCGAGTAGCTAGTGAAATATCATCACTGACCTCAGGAATGCCAGGATTTCATCCAGGGGCACACCGACTTGCTCCTCAGCAGCTGTATTATGGTCAGGGAAACCCCGGGCTGGTGCCCCCACCGCCTGGATACAGCTTCCAGCCTCAACTTATGAACGGAATGCGACCTAGTATGGGGCCCAACTTCATCATGCCCTACCAGTTTCAGAGACAAGTACAGCCCGGGCCACGCTCGGGGATCAGGCGTGGTGGAAATTCACAACCTGTACATCAGCAGCAGCAGCAGCAGCAGCAGCAGTTAATGCTCCGTGGCGCTGGACAAGGTTATAGATACATGAACAATGCACGAAATGGATTAGAGCCGCCGGTCCTGCCCCATGGTCTTGTTGGTCCAATGATGCCTCTAGCTTTTGATAGTTCTGGGATGTCTAGCCCACCAATCGACATCCAGCGATCAAGGGCTGTGCCTACTTCAACACTCGCATCTGCATTAGCTTCTGCTACACCTACACATCAGCGTTTGATGCTCGGCGAGCAGCTGTATCCACTCGTAGAACGTCTCGAGCCAACTCATGCGGCAAAGGTTACTGGAATGTTGCTCGAGATGGACCAGCCAGAGGTGCTTCATCTCATTGAACCACCTGATGACTTGAAGAATAAGGTGGCTGAGGCAATGGAAGTCCTCCGCAAAGCTTCGTCGGAACCCGACCTCTCTGATCAGCTTGGTTCGTTGGTGCTGACCAAATGA 1884 46.18 MAAMIPAPVISAPIQTAVIPPPVGSVPTGEVFLSSSLYVGDLELNVNEAQLLELFSRVAQVVSLRVCRDQTRRVSLGYGYVNFSNHQDAMTAMEHLNFTSINGKPIRIMISNRDPSIRKSGYANVFIKNLDASIDNKALHDTFASFGTVLSCKVALDSNGQSKGYGFVQFDTKEAAESAIIKLNGMLLNDKQVYVGHFIRRQERMRANGLQFTNVYVKNLPENMMDDGLKSLFGVHGTITSAVVKTDSNGKSKGFGFVNFESTDSAAAAVEKLNGTLIGEDKILYVGKAQRKAEREAELKEKFERDRKIRFDKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDENGVSKGTGFVAFSSPDDAARATQFAQIRVASEISSLTSGMPGFHPGAHRLAPQQLYYGQGNPGLVPPPPGYSFQPQLMNGMRPSMGPNFIMPYQFQRQVQPGPRSGIRRGGNSQPVHQQQQQQQQQLMLRGAGQGYRYMNNARNGLEPPVLPHGLVGPMMPLAFDSSGMSSPPIDIQRSRAVPTSTLASALASATPTHQRLMLGEQLYPLVERLEPTHAAKVTGMLLEMDQPEVLHLIEPPDDLKNKVAEAMEVLRKASSEPDLSDQLGSLVLTK 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6557787 6563484 - Cp4.1LG13g10650.1 Cpe13g00706 479904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00706 627 SUPERFAMILY RNA-binding domain, RBD 35 202 IPR035979 GO:0003676
Cpe13g00706 627 SUPERFAMILY PABC (PABP) domain 439 614 IPR036053 GO:0003723
Cpe13g00706 627 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 384 IPR000504 GO:0003723
Cpe13g00706 627 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 535 612 IPR002004 GO:0003723
Cpe13g00706 627 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Cpe13g00706 627 SUPERFAMILY RNA-binding domain, RBD 211 297 IPR035979 GO:0003676
Cpe13g00706 627 CDD RRM1_I_PABPs 36 115 - -
Cpe13g00706 627 PANTHER RNA BINDING PROTEIN 33 374 - -
Cpe13g00706 627 PANTHER RNA BINDING PROTEIN 374 615 - -
Cpe13g00706 627 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 35 374 IPR006515 GO:0003723
Cpe13g00706 627 Gene3D - 124 197 IPR012677 -
Cpe13g00706 627 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723
Cpe13g00706 627 SUPERFAMILY RNA-binding domain, RBD 314 375 IPR035979 GO:0003676
Cpe13g00706 627 SMART rrm2_1 124 196 IPR003954 GO:0003676
Cpe13g00706 627 SMART rrm2_1 36 109 IPR003954 GO:0003676
Cpe13g00706 627 SMART rrm2_1 214 286 IPR003954 GO:0003676
Cpe13g00706 627 SMART rrm2_1 318 390 IPR003954 GO:0003676
Cpe13g00706 627 Gene3D - 33 123 IPR012677 -
Cpe13g00706 627 Pfam Poly-adenylate binding protein, unique domain 543 607 IPR002004 GO:0003723
Cpe13g00706 627 CDD RRM3_I_PABPs 212 292 - -
Cpe13g00706 627 CDD RRM2_I_PABPs 121 197 IPR045305 -
Cpe13g00706 627 MobiDBLite consensus disorder prediction 452 475 - -
Cpe13g00706 627 Coils Coil 286 306 - -
Cpe13g00706 627 Gene3D - 309 370 IPR012677 -
Cpe13g00706 627 Gene3D - 531 612 - -
Cpe13g00706 627 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 195 IPR000504 GO:0003723
Cpe13g00706 627 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 375 IPR000504 GO:0003723
Cpe13g00706 627 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 283 IPR000504 GO:0003723
Cpe13g00706 627 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 193 IPR000504 GO:0003723
Cpe13g00706 627 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 107 IPR000504 GO:0003723
Cpe13g00706 627 PANTHER POLYADENYLATE-BINDING PROTEIN 33 374 - -
Cpe13g00706 627 PANTHER POLYADENYLATE-BINDING PROTEIN 374 615 - -
Cpe13g00706 627 SMART poly_2 547 610 IPR002004 GO:0003723
Cpe13g00706 627 SMART rrm1_1 124 196 IPR000504 GO:0003723
Cpe13g00706 627 SMART rrm1_1 318 389 IPR000504 GO:0003723
Cpe13g00706 627 SMART rrm1_1 36 109 IPR000504 GO:0003723
Cpe13g00706 627 SMART rrm1_1 214 287 IPR000504 GO:0003723
Cpe13g00706 627 Gene3D - 207 308 IPR012677 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00431 Cpe-Chr1:2489190 Cpe13g00706 Cpe-Chr13:6557787 0 dispersed
Cpe13g00706 Cpe-Chr13:6557787 Cpe14g00289 Cpe-Chr14:1694337 0 dispersed
Cpe01g02142 Cpe-Chr1:18036128 Cpe13g00706 Cpe-Chr13:6557787 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00706 K13126 - csv:101219081 975.311