Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00715 ATGGACCTCCGTAGCCATTTGTTTCGTTACTGTATTGCTTTGGTTCTTTGTTTTTCAGTATCTTTGTCGGTCGCCGCCATATCTCTAGGTTCGTCTTTGAGAGCTTCGAATCCCAATCAGACGTGGGATTCGGCTAATGGAGATTTCTCTTTGAGGTTTCATCCGGCGGATTCCTCCGGTTCTTCTTTTATCGCCGGCATAGTCTTTACTGGTGGCGTTCCTACTATCTGGTCCGCTGGCGGCGGTGCTACGCTGGATGCTTCTGGTGCTCTTCACTTTCAATCCGACGGTAACCTTCGTCTCGTCGATGGCTCTGGTGCTGTCGTTTGGGAATCTAACACCACCGGCCGTGGAGTCTCCTCCGCTGTGCTCGAGGACTCCGGCAACCTCATCCTTCGAAATAGTAGTTCCCAGGCCGTCTGGTCTTCGTTCGATCACCCGACGGACACGATTGTTCCATCGCAGAATTTCACAGTGGGCATGGTCCTGCGATCTGGTCAGTATTCTTTAAACCTACTTAACATTGGGAATATAACTCTGACTTGGAATGGAGATGGACCGAATGGTGATGTAGTTTATTGGAATCATGGATTAAATACGTCGATCAATGGCTCCTTGAATTCTCCTAGTTTACGATTAGATCCTATTGGAATGTTGGCTGTTTATGATACCAGAATACCTGCTGGATCATTTGTAGCTTATAGCAACGATTACGCAGATAATGGTGGCGGTGCTACTTTTAGGTTTCTGAGGTTGAAAGATGATGGAAATTTAGAGATTCATAGCGTTGTTAGAGGCAGTGGGTCTGAATCCGTGGGATGGAAAGCTGTTCCAGATAAGTGTCAAATATTTGGGTTCTGTGGGGAACTTAGTATTTGTAGCTATAATGATACAAGTCCGATCTGTAGTTGCCCATCTGCAAACTTTGAGCCAGTTGATCACCACGATTGGAAGAAAGGGTGTAAGGCGAAATTGGATATCAGAAACTGTTCCAGCGGCATCACGATGTTGGAGTTGAAGAACACAAAGCTATTAACATATCCAAAGAACTTAGAGGTCTACTCCATGCAGATATCAGGGTGTCAATCAAATTGTCGACAGAGTTCTGCTTGTGATGCTTCCACTGCGCCATCAGATGGGAATGGATTTTGTTATTACATACCGTCGGGCTTCATTAGGGGATATCAGAGTGCTGCGTTGCCAAGCAGTTCATTTCTCAAGGTCTGTGGAGAAGTGCTTGAAAGCCAATTGGAATCTTCTGATGTTTCAAGGCCGGGTGGTATGAATTTGAAGGCTTGGGTCTTGGTGGTTGTGGTTTTGGTCACCCTTTTTGCCATAATTGTTTGTGAGGCTGGTTTATGGTGGTGGTGTTGCAGGAACAGCCCCAAGTTTGGAGCGATGTCCAGCCAATACACCCTTCTTGAGTATGCTTCTGGTGCTCCTGTTCAATTCTCATTTAAAGAACTCCATCGTGTGACCAATGGATTCAAGGAAAAGCTTGGGGCTGGTGGATTTGGAGCTGTTTATAAAGGCGTTCTTACTAATAAGACGGTCGTCGCAGTGAAGCAACTCGAGGGAATCGAGCAGGGAGAGAAGCAATTTAGGATGGAGGTAGCAACTATAAGTAGCACACACCATTTGAATCTCGTGAGATTGGTCGGTTTTTGCTCGGAAGGACGGCATAGGCTGTTAGTATATGAGCTCATGAAGAATGGTTCTCTTGATAGCTTGCTTTTCAAGGGAGAAGAAGGACAATCTGGGAAGTTCCTCAGCTGGGAAGATCGGTTCAAAATTGCTGCTGGCACTGCCAAGGGGATCACATACCTTCATGAGGAGTGCCGTGATTGCATCATTCATTGCGATATAAAGCCAGAAAACATTCTCTTAGATGAGAATTTAAACGCTAAAGTCTCAGATTTTGGCCTGGCAAAGCTCATTAACATGAAAGATCACCGATATCGAACCTTGACTAGCGTAAGAGGAACACGAGGCTATTTGGCACCCGAATGGCTCGCAAATCTGCCACTGACTTCAAAATCTGATGTTTTCAGCTATGGTATGGTTCTTTTAGAGATCGTAAGCGGACGAAGGAACTTCGACGTTACTGCCGAAACAAATCACAAGAGGTTCTCTTTGTGGGCTTATGAAGAGTTTGAAAAGGGGAATCTCAGAGAAATTGTTGACAAAAGGCTGGTGGATCAAGAGATTGATATGGAGCAAGTGAGCAGGGTGGTTCAGGTGAGCTTTTGGTGCATCCAGGAGCAACCATCTCAGAGGCCAACAATGGGAAAAGTGGTTCAGATGATCGAAGGCGTCATCGACATCGAGAGGCCTCCTGCACCAAAGGTAACATCCATGGTTTCTGCAAGTGGAACCAGCACGTATATCAGCAGCAATATAAGCAATTTCTCGACCGCTGAAACACCCGCTACACCGGCCTCATTTTCGTCGTCGCTTGCTGCAGCAGACTTGACTCCTGGTGGCAGCATTTGTGAGAAAACAAGTTCATCTCTTCTGCACTCAAGGTACGACACTCCAACTAGCCTCTAG 2550 46.16 MDLRSHLFRYCIALVLCFSVSLSVAAISLGSSLRASNPNQTWDSANGDFSLRFHPADSSGSSFIAGIVFTGGVPTIWSAGGGATLDASGALHFQSDGNLRLVDGSGAVVWESNTTGRGVSSAVLEDSGNLILRNSSSQAVWSSFDHPTDTIVPSQNFTVGMVLRSGQYSLNLLNIGNITLTWNGDGPNGDVVYWNHGLNTSINGSLNSPSLRLDPIGMLAVYDTRIPAGSFVAYSNDYADNGGGATFRFLRLKDDGNLEIHSVVRGSGSESVGWKAVPDKCQIFGFCGELSICSYNDTSPICSCPSANFEPVDHHDWKKGCKAKLDIRNCSSGITMLELKNTKLLTYPKNLEVYSMQISGCQSNCRQSSACDASTAPSDGNGFCYYIPSGFIRGYQSAALPSSSFLKVCGEVLESQLESSDVSRPGGMNLKAWVLVVVVLVTLFAIIVCEAGLWWWCCRNSPKFGAMSSQYTLLEYASGAPVQFSFKELHRVTNGFKEKLGAGGFGAVYKGVLTNKTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLVGFCSEGRHRLLVYELMKNGSLDSLLFKGEEGQSGKFLSWEDRFKIAAGTAKGITYLHEECRDCIIHCDIKPENILLDENLNAKVSDFGLAKLINMKDHRYRTLTSVRGTRGYLAPEWLANLPLTSKSDVFSYGMVLLEIVSGRRNFDVTAETNHKRFSLWAYEEFEKGNLREIVDKRLVDQEIDMEQVSRVVQVSFWCIQEQPSQRPTMGKVVQMIEGVIDIERPPAPKVTSMVSASGTSTYISSNISNFSTAETPATPASFSSSLAAADLTPGGSICEKTSSSLLHSRYDTPTSL 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6620524 6623073 - Cp4.1LG13g10740.1 Cpe13g00715 479913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00715 849 Gene3D Phosphorylase Kinase; domain 1 463 568 - -
Cpe13g00715 849 PIRSF SRK 1 821 IPR024171 GO:0004674
Cpe13g00715 849 Pfam Protein kinase domain 497 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00715 849 ProSitePatterns Protein kinases ATP-binding region signature. 500 522 IPR017441 GO:0005524
Cpe13g00715 849 CDD STKc_IRAK 500 771 - -
Cpe13g00715 849 Gene3D - 148 272 IPR036426 -
Cpe13g00715 849 PANTHER OS07G0415500 PROTEIN 10 829 - -
Cpe13g00715 849 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 169 IPR036426 -
Cpe13g00715 849 ProSiteProfiles Bulb-type lectin domain profile. 27 145 IPR001480 -
Cpe13g00715 849 SMART serkin_6 494 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00715 849 Pfam D-mannose binding lectin 84 160 IPR001480 -
Cpe13g00715 849 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Cpe13g00715 849 CDD B_lectin 36 147 IPR001480 -
Cpe13g00715 849 SUPERFAMILY Protein kinase-like (PK-like) 476 769 IPR011009 -
Cpe13g00715 849 PANTHER G-TYPE LECTIN S-RECEPTOR SERINE/THREONINE-PROTEIN KINASE 10 829 - -
Cpe13g00715 849 Gene3D Transferase(Phosphotransferase) domain 1 569 780 - -
Cpe13g00715 849 SMART blect_4 32 147 IPR001480 -
Cpe13g00715 849 ProSiteProfiles Protein kinase domain profile. 494 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe13g00715 849 Gene3D - 26 145 IPR036426 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00715 - - - mcha:111006322 1424.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00091 Cpe-Chr3:472686 Cpe13g00715 Cpe-Chr13:6620524 1.90E-124 dispersed
Cpe06g00388 Cpe-Chr6:2196627 Cpe13g00715 Cpe-Chr13:6620524 9.88E-76 dispersed
Cpe08g01181 Cpe-Chr8:8734359 Cpe13g00715 Cpe-Chr13:6620524 1.50E-92 dispersed
Cpe13g00425 Cpe-Chr13:4567063 Cpe13g00715 Cpe-Chr13:6620524 7.49E-110 dispersed
Cpe13g00715 Cpe-Chr13:6620524 Cpe18g00145 Cpe-Chr18:3001923 2.04E-17 dispersed
Cpe13g00714 Cpe-Chr13:6617284 Cpe13g00715 Cpe-Chr13:6620524 2.04E-64 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1290 . . . . . . . . . . . . . . . . Cpe13g00715 . . . . . . . . . . . . . . . . . . . . . Cme03g01093 . . . Bda01g01467 . . . . . . . . . . Car15g00518 . . . . . . . . . . . . . . . . Lsi08g00607 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010545 1 1 0 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 2 0 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62799 PF00069 Pkinase 7.50E-52 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00715 Cpe_Chr13 FPKM 8.673908 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0