Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00716 ATGCTCTTGAAGCCCTTCAACACCGTTGCCGTCGTATTCATGCTCGCTTTCGTGTTCTTCATCCTTTTCTTCACTGGCTTCCTCGAATTTCCGCCGGCATCCACTTCCATCGTACCGGCCGTCGATGATTTGAATCTATCCGTAGCCGAGTTCGCTTTCGATCCTTTCTCCGATTTGATCACCGCCTTTAAGAAATGGGACGCTCAGGTTGGCTGCGATCGATTTCGGGAGAAAATTAGCGGCGGTATGGGAAATGGATCTTCGTCGACTTCGCTACAGCTTGTCGGCGGCGACTCTAATTCGGAATGTGGAGGGCTGAAACTGAATCATGTCTCTGTTTTGGTGAAAGGATGGACATGGATCCCTGATAATTTAGACAATTTGTATTCGTGTTCTTGTGGATTGAGCTGTCTTTGGACTAAATCTTCTGTTCTTGCCGATAAACCTGACGCCTTGTTCTTCGAGACCAGTACGCCTCCGCGTCAGAGGCGCAGGGGTGATCCTCTCCGTATTTATATGGATCTCGAGGCTGGTCGGAAGCGCTCAGGTTTTGAGGATCTATTCGTTAGTTATCATGCGGAAGACGATGTTCAGTCAACCTATGCAGGAGCACTCTTTCACAATGGTCGAAACTATCACGTATCTTCTTCTAAAAACAATGATACGCTCGTTTATTGGTCGTCGTCTCGTTGTCTTCCCCAACGAAACCAGCTTGCTAGGAAGCTTCTAAGCTTGCTGCCTCACCATTCATTTGGCAAGTGCTTGAACAATGTAGGCGGGCTTGACATGGCCCTTGATATGTACCCTGAATGTGCAAACGATGCCAGTGTCACCCCAAAATGGTGGGATCACTTGCATTGTGCAATGTCTCATTACAAATTCGTTCTAGCAATCGAAAACACGATGACCGAGAGTTACGTAACGGAGAAGCTATTTTATGCGCTAGACTCCGGTTCGGTTCCGATCTATTTTGGTGCTCCAAATGTCTGGGACTTTGTCCCTCCACATTCCATAATTGATGGGTCTAAATTCAGCTCGTTGGAAGAGTTAGCTTCTTATGTTAAACGACTTGCTGATGATCCGGTAGCTTATGCTGAATACCATGCTTGGAGACGATGCCGTGCGTTGGGCAACTATAGGAGGACCCGAGCTGCAAGCCTCGACACGCTGCCGTGCCGGGTATGTAATGCCGTGAGCAGAAGGGGTGGTAGAAATGGATGA 1221 48.16 MLLKPFNTVAVVFMLAFVFFILFFTGFLEFPPASTSIVPAVDDLNLSVAEFAFDPFSDLITAFKKWDAQVGCDRFREKISGGMGNGSSSTSLQLVGGDSNSECGGLKLNHVSVLVKGWTWIPDNLDNLYSCSCGLSCLWTKSSVLADKPDALFFETSTPPRQRRRGDPLRIYMDLEAGRKRSGFEDLFVSYHAEDDVQSTYAGALFHNGRNYHVSSSKNNDTLVYWSSSRCLPQRNQLARKLLSLLPHHSFGKCLNNVGGLDMALDMYPECANDASVTPKWWDHLHCAMSHYKFVLAIENTMTESYVTEKLFYALDSGSVPIYFGAPNVWDFVPPHSIIDGSKFSSLEELASYVKRLADDPVAYAEYHAWRRCRALGNYRRTRAASLDTLPCRVCNAVSRRGGRNG 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6625699 6628764 - Cp4.1LG13g10780.1 Cpe13g00716 479914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00716 406 PIRSF FucT_plant 1 406 IPR017177 -
Cpe13g00716 406 Gene3D - 171 379 IPR038577 -
Cpe13g00716 406 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 219 401 IPR001503 GO:0006486|GO:0008417|GO:0016020
Cpe13g00716 406 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 13 405 IPR001503 GO:0006486|GO:0008417|GO:0016020
Cpe13g00716 406 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 98 400 - -
Cpe13g00716 406 PANTHER ALPHA-(1,4)-FUCOSYLTRANSFERASE 13 405 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00716 K14412 FUT13, FucTC; alpha-1,4-fucosyltransferase [EC:2.4.1.65] - csv:101216230 762.296
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00910 Cpe13g00716 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00716 Cpe-Chr13:6625699 Cpe14g00293 Cpe-Chr14:1719598 7.46E-15 dispersed
Cpe01g02150 Cpe-Chr1:18090933 Cpe13g00716 Cpe-Chr13:6625699 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1240 . . . . . . . . . . . Cma09g01112 . . . . Cpe13g00716 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g01118 . . . . . Cpe02g00910 Bhi09g01524 . . . . Mch11g1474 . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g01481 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 56.0 3.0e-155 545.8
Cpe20g00012 . 119 587 Xyloglucan Fucosyltransferase1 AT1G14080 54.0 6.5e-150 528.1
Cpe02g01051 . 94 582 Xyloglucan Fucosyltransferase1 AT1G14080 52.0 1.6e-148 523.5
Cpe01g01481 . 81 569 Xyloglucan Fucosyltransferase1 AT1G14100 56.9 3.4e-164 575.5
Cpe20g00012 . 119 588 Xyloglucan Fucosyltransferase1 AT1G14100 57.1 2.5e-159 559.3
Cpe02g01051 . 94 582 Xyloglucan Fucosyltransferase1 AT1G14100 54.3 1.4e-157 553.5
Cpe01g01481 . 81 570 Xyloglucan Fucosyltransferase1 AT1G14110 51.7 4.3e-137 485.3
Cpe20g00012 . 119 589 Xyloglucan Fucosyltransferase1 AT1G14110 51.9 1.7e-133 473.4
Cpe15g00486 CCT 1 509 Xyloglucan Fucosyltransferase1 AT1G49710 64.4 2.3e-189 659.1
Cpe14g00293 . 30 369 Xyloglucan Fucosyltransferase1 AT1G49710 69.5 7.6e-140 494.6
Cpe13g00716 CCT 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.7 4.0e-168 588.2
Cpe01g02150 . 7 413 Xyloglucan Fucosyltransferase1 AT1G71990 66.9 1.8e-160 562.8
Cpe01g01481 . 6 568 Xyloglucan Fucosyltransferase1 AT2G03210 56.2 2.8e-183 639.0
Cpe20g00012 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.6 4.8e-167 585.1
Cpe02g01051 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.7 1.7e-164 576.6
Cpe14g00402 . 14 507 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 7.2e-139 491.5
Cpe01g01481 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.0 9.0e-203 703.7
Cpe02g01051 . 51 580 Xyloglucan Fucosyltransferase1 AT2G03220 58.6 3.4e-186 648.7
Cpe20g00012 . 119 585 Xyloglucan Fucosyltransferase1 AT2G03220 64.2 7.9e-183 637.5
Cpe14g00402 . 13 504 Xyloglucan Fucosyltransferase1 AT2G03220 53.0 5.2e-150 528.5
Cpe01g01481 . 101 562 Xyloglucan Fucosyltransferase1 AT2G15350 53.6 3.0e-152 535.8
Cpe20g00012 . 99 586 Xyloglucan Fucosyltransferase1 AT2G15350 50.3 2.1e-145 513.1
Cpe01g01481 . 101 568 Xyloglucan Fucosyltransferase1 AT2G15370 52.3 9.6e-146 514.2
Cpe20g00012 . 110 587 Xyloglucan Fucosyltransferase1 AT2G15370 50.6 3.9e-139 492.3
Cpe01g01481 . 92 568 Xyloglucan Fucosyltransferase1 AT2G15390 53.3 1.9e-149 526.6
Cpe20g00012 . 119 587 Xyloglucan Fucosyltransferase1 AT2G15390 51.7 3.8e-142 502.3
Cpe02g01051 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 51.3 7.2e-141 498.0
Cpe15g00486 CCT 1 509 Xyloglucan Fucosyltransferase1 AT3G19280 65.1 1.6e-190 662.9
Cpe14g00293 . 42 369 Xyloglucan Fucosyltransferase1 AT3G19280 75.3 9.1e-146 514.2
Cpe01g01481 . 6 568 Xyloglucan Fucosyltransferase1 AT2G03210 56.2 2.8e-183 639.0
Cpe20g00012 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.6 4.8e-167 585.1
Cpe02g01051 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.7 1.7e-164 576.6
Cpe14g00402 . 14 507 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 7.2e-139 491.5
Cpe01g01481 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.0 9.0e-203 703.7
Cpe02g01051 . 51 580 Xyloglucan Fucosyltransferase1 AT2G03220 58.6 3.4e-186 648.7
Cpe20g00012 . 119 585 Xyloglucan Fucosyltransferase1 AT2G03220 64.2 7.9e-183 637.5
Cpe14g00402 . 13 504 Xyloglucan Fucosyltransferase1 AT2G03220 53.0 5.2e-150 528.5
Cpe01g01481 . 6 568 Xyloglucan Fucosyltransferase1 AT2G03210 56.2 2.8e-183 639.0
Cpe20g00012 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.6 4.8e-167 585.1
Cpe02g01051 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.7 1.7e-164 576.6
Cpe14g00402 . 14 507 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 7.2e-139 491.5
Cpe01g01481 . 92 568 Xyloglucan Fucosyltransferase1 AT2G15390 53.3 1.9e-149 526.6
Cpe20g00012 . 119 587 Xyloglucan Fucosyltransferase1 AT2G15390 51.7 3.8e-142 502.3
Cpe02g01051 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 51.3 7.2e-141 498.0
Cpe01g01481 . 101 568 Xyloglucan Fucosyltransferase1 AT2G15370 52.3 9.6e-146 514.2
Cpe20g00012 . 110 587 Xyloglucan Fucosyltransferase1 AT2G15370 50.6 3.9e-139 492.3
Cpe01g01481 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 56.0 3.0e-155 545.8
Cpe20g00012 . 119 587 Xyloglucan Fucosyltransferase1 AT1G14080 54.0 6.5e-150 528.1
Cpe02g01051 . 94 582 Xyloglucan Fucosyltransferase1 AT1G14080 52.0 1.6e-148 523.5
Cpe01g01481 . 81 569 Xyloglucan Fucosyltransferase1 AT1G14100 56.9 3.4e-164 575.5
Cpe20g00012 . 119 588 Xyloglucan Fucosyltransferase1 AT1G14100 57.1 2.5e-159 559.3
Cpe02g01051 . 94 582 Xyloglucan Fucosyltransferase1 AT1G14100 54.3 1.4e-157 553.5
Cpe01g01481 . 81 570 Xyloglucan Fucosyltransferase1 AT1G14110 51.7 4.3e-137 485.3
Cpe20g00012 . 119 589 Xyloglucan Fucosyltransferase1 AT1G14110 51.9 1.7e-133 473.4
Cpe01g01481 . 101 562 Xyloglucan Fucosyltransferase1 AT2G15350 53.6 3.0e-152 535.8
Cpe20g00012 . 99 586 Xyloglucan Fucosyltransferase1 AT2G15350 50.3 2.1e-145 513.1
Cpe15g00486 CCT 1 509 Xyloglucan Fucosyltransferase1 AT3G19280 65.1 1.6e-190 662.9
Cpe14g00293 . 42 369 Xyloglucan Fucosyltransferase1 AT3G19280 75.3 9.1e-146 514.2
Cpe15g00486 CCT 1 509 Xyloglucan Fucosyltransferase1 AT1G49710 64.4 2.3e-189 659.1
Cpe14g00293 . 30 369 Xyloglucan Fucosyltransferase1 AT1G49710 69.5 7.6e-140 494.6
Cpe13g00716 CCT 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.7 4.0e-168 588.2
Cpe01g02150 . 7 413 Xyloglucan Fucosyltransferase1 AT1G71990 66.9 1.8e-160 562.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010578 1 1 1 1 1 1 2 1 1 0 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00716 Cpe_Chr13 FPKM 2.511166 4.083255 24.177681 25.259008 48.348179 42.268887 40.662235 41.346771 42.297043 37.573845