Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00765 ATGCTTGCTACCATTGGCATTCTGTTCTTCATCTGGGTTTTGAGCTCCTCTCTGCCTCCTCCTGCCATGGCTACTTTCACCTTCAATCTCACTGTTCCTCATCTTCTTCCAGATCCTGAAGCTGTTGCTTATCAAGTTCAGAGGGCTGTGAACGATTCCTTTTCCCGGAGGCAAATGCTGTCCGTTAATTCGAAAGATCAATCCAGTTCCTGTCAAACTGGAAACCCTATCGACGATTGTTGGCGCTGCGACTCGAACTGGCAAGCCAATCGCCAACGCCTCGCCGATTGCGGCATTGGATTCGGCCGAGACGCCATGGGAGGGAAGGGAGGTCAGATCTATGTTGTTACAGATTCCTCCGACTCCGACCCCGTGAACCCCCGCCCTGGAACTCTCCGCTACGCCGTGGTTCAAGACGAACCTCTCTGGATTGTTTTTGCTGCAGATATGACAATCAAACTCAAATACGAACTCATGATGAACAGTTACAAAACCCTAGATGGTCGCGGCGCCAATGTCCATATCACCGGGGGCGGTTGCGTCACACTTCAATACATCTCGAATGTAATCATCCATAACATTAACATCCACCACTGTATTCCTACCGGCCACACCAACATCCGGTCGTCCCCCACGCACATCGGATACCGAGGAAAGTCCGATGGCGACGGAATCTCGATCTTCAGCTCGCGTAACATTTGGATCGATCATTGCTCACTCTCGTACTGTACCGATGGTTTAATCGACGCCATAATGGGATCTACCGGAATCACGATCTCCAACAACTACTTCTCGCACCACGACGAGGTGATGCTGCTAGGGCACGACGACGGCTACTCGCCGGATTCGGCTATGCAGGTGACGATTGCGTTTAATTTGTTCGGCGAGAAGCTCGTTCAGAGGATGCCCCGGTGCCGGCGAGGATACTTTCATGTCGTTAACAACGACTTCCGATCGTGGGAGATGTACGCCATCGGCGGCAGTGGTGATCCGACTATCAACAGCCAAGGGAATCGGTATATTGCTCCGGGAAATCCCAACGCGAAGGAGGTGACAAAGCGCGTGGACACAAACGCGGGTGATTGGTCGGAGTGGAACTGGAGGACGGAGGGGGACATAATGGTAAATGGAGCATTTTTTGTGCCGTCCGGGGAAGGACTGAGCAATATGTACGTTAAAGCGTCGAGTGTGGCGCCCAAATCCGCCGCTCTTGTCGATCGCCTGACACTCAACGCCGGTGTCTTCGGCGGGGCCAGGGAGAATAGACAGAGCTACTCATATCCTGGAGACGAAAGCTCCTCTAGTTCGACTTCGAGTAGCAGCGATGGCGGTGGTGACTATTTCGGGATGATATTCGGTGGAGGCGGGGGAGTGAATAGTGCACCACCACCACCATCTCTTTCGGTTGTTAACATGCTCATTCTAACTCTGGTTACTGTTTTAGTTGTGTACACGAACAACTATGAGTCTGCTTTATTATCATTGTAG 1488 51.95 MLATIGILFFIWVLSSSLPPPAMATFTFNLTVPHLLPDPEAVAYQVQRAVNDSFSRRQMLSVNSKDQSSSCQTGNPIDDCWRCDSNWQANRQRLADCGIGFGRDAMGGKGGQIYVVTDSSDSDPVNPRPGTLRYAVVQDEPLWIVFAADMTIKLKYELMMNSYKTLDGRGANVHITGGGCVTLQYISNVIIHNINIHHCIPTGHTNIRSSPTHIGYRGKSDGDGISIFSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDGYSPDSAMQVTIAFNLFGEKLVQRMPRCRRGYFHVVNNDFRSWEMYAIGGSGDPTINSQGNRYIAPGNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMVNGAFFVPSGEGLSNMYVKASSVAPKSAALVDRLTLNAGVFGGARENRQSYSYPGDESSSSSTSSSSDGGGDYFGMIFGGGGGVNSAPPPPSLSVVNMLILTLVTVLVVYTNNYESALLSL 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6983856 6992355 - Cp4.1LG13g10220.1 Cpe13g00765 479963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00765 495 PANTHER PECTATE LYASE 18-RELATED 5 434 IPR045032 GO:0030570
Cpe13g00765 495 PRINTS Pollen allergen Amb family signature 97 114 IPR018082 -
Cpe13g00765 495 PRINTS Pollen allergen Amb family signature 121 146 IPR018082 -
Cpe13g00765 495 PRINTS Pollen allergen Amb family signature 157 173 IPR018082 -
Cpe13g00765 495 PRINTS Pollen allergen Amb family signature 221 242 IPR018082 -
Cpe13g00765 495 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Cpe13g00765 495 PRINTS Pollen allergen Amb family signature 323 342 IPR018082 -
Cpe13g00765 495 PRINTS Pollen allergen Amb family signature 365 389 IPR018082 -
Cpe13g00765 495 PRINTS Pollen allergen Amb family signature 394 417 IPR018082 -
Cpe13g00765 495 MobiDBLite consensus disorder prediction 421 442 - -
Cpe13g00765 495 Gene3D - 74 416 IPR012334 -
Cpe13g00765 495 SUPERFAMILY Pectin lyase-like 75 414 IPR011050 -
Cpe13g00765 495 Coils Coil 494 495 - -
Cpe13g00765 495 MobiDBLite consensus disorder prediction 425 442 - -
Cpe13g00765 495 Pfam Pectate lyase 157 328 IPR002022 -
Cpe13g00765 495 PANTHER PECTATE LYASE 5 434 - -
Cpe13g00765 495 SMART amb_all 149 346 IPR002022 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00403 Cpe13g00765 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00403 Cpe-Chr9:2530200 Cpe13g00765 Cpe-Chr13:6983856 0 dispersed
Cpe10g00244 Cpe-Chr10:1418792 Cpe13g00765 Cpe-Chr13:6983856 0 dispersed
Cpe10g00861 Cpe-Chr10:4867563 Cpe13g00765 Cpe-Chr13:6983856 1.69E-46 dispersed
Cpe13g00765 Cpe-Chr13:6983856 Cpe20g00339 Cpe-Chr20:1918062 0 dispersed
Cpe01g01256 Cpe-Chr1:7517844 Cpe13g00765 Cpe-Chr13:6983856 0 wgd
Cpe01g02212 Cpe-Chr1:18815530 Cpe13g00765 Cpe-Chr13:6983856 0 wgd
Cpe13g00765 Cpe-Chr13:6983856 Cpe19g00431 Cpe-Chr19:3875886 1.67E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00765 K01728 - csv:101207535 840.491