Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe13g00780 | ATGTCCCTAATGCTCTTCTTTGAGAGGCTTTATATGGGTGTTGTCATTCTCTTTCTTAAGCTCTTTGCAACAAACCCTCACAACACTTATAAGTGGGAGCCCATTCGAGATGATCTTGAGCTTGCCCATTTTGTTTATCCCATGGTTTTGGTCCAAATTCCAATGTACAATGAAAGCGAGGTTTATCGATTATCTATTGGAGCAGCATGTGGACTTTCATGGCCATCTGATAGGATCATCATTCAAGTTCTTGATGATTCTACTGATCCTTCTATCAAGGATCTGGTGGAATTAGAGTGCAAAAGATGGGCAAGCAAAGGGATAAACATAAAGTACGAGATCCGAGACAGCAGAAATGGGTACAAAGCAGGGGCTCTAAAAGAGGGAATGAAGCATAATTACGTTAAGCTCTGTGATTACGTCGCTATTTTCGACGCCGATTTCCAACCAGAGCCTGATTTCCTTTGGCGTACCATTCCATTTCTTACGAACAATCCTGAGATTGCTCTTGTTCAAGCTCGCTGGAAATCATTCCACCTGATCATTTTCTGGATCCTTTTCGAGAATGTCATGTCGCTGCACCGAACAAAGGCAACATTCATCGGTCTGTTGGAAGCAGGGAGAGTAAATGAATGGGTCGTCACCGAGAAATTGGGAGATGCACTAAAGACTAAACTAGGTTCCAAAACTCCCTGGAAACCTCAGTTTAGATTCGGAGAAAGACTCCATCTGCTTGAGCTTTGTGTTGGAGCCTATCTCTTCTTCTGCGGCTGCTATGATCTCAACTTCGGGAAGAACCGATACTTCATCTACCTCTTCCTTCAGTCATTTGCTTTCTTCATCGCCGGGGTCGGTTACATCGGAACTCTGGTTCCCAACTCTTAG | 885 | 43.84 | MSLMLFFERLYMGVVILFLKLFATNPHNTYKWEPIRDDLELAHFVYPMVLVQIPMYNESEVYRLSIGAACGLSWPSDRIIIQVLDDSTDPSIKDLVELECKRWASKGINIKYEIRDSRNGYKAGALKEGMKHNYVKLCDYVAIFDADFQPEPDFLWRTIPFLTNNPEIALVQARWKSFHLIIFWILFENVMSLHRTKATFIGLLEAGRVNEWVVTEKLGDALKTKLGSKTPWKPQFRFGERLHLLELCVGAYLFFCGCYDLNFGKNRYFIYLFLQSFAFFIAGVGYIGTLVPNS | 294 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 7081766 | 7086074 | + | Cp4.1LG13g10210.1 | Cpe13g00780 | 479978 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe13g00780 | 294 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 46 | 180 | IPR029044 | - | |
| Cpe13g00780 | 294 | Pfam | Glycosyl transferase family 2 | 52 | 174 | IPR001173 | - | |
| Cpe13g00780 | 294 | PANTHER | GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9-LIKE | 1 | 176 | - | - | |
| Cpe13g00780 | 294 | PANTHER | GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9-LIKE | 176 | 293 | - | - | |
| Cpe13g00780 | 294 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 39 | 215 | IPR029044 | - | |
| Cpe13g00780 | 294 | PANTHER | - | 176 | 293 | - | - | |
| Cpe13g00780 | 294 | PANTHER | - | 1 | 176 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe08g01050 | Cpe-Chr8:8031988 | Cpe13g00780 | Cpe-Chr13:7081766 | 1.09E-151 | dispersed | |
| Cpe13g00780 | Cpe-Chr13:7081766 | Cpe19g00450 | Cpe-Chr19:3992568 | 1.24E-149 | dispersed | |
| Cpe16g00485 | Cpe-Chr16:5928488 | Cpe13g00780 | Cpe-Chr13:7081766 | 9.07E-16 | dispersed | |
| Cpe01g02198 | Cpe-Chr1:18694227 | Cpe13g00780 | Cpe-Chr13:7081766 | 6.43E-153 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe13g00780 | K13680 | - | oeu:111383842 | 478.789 |