Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00800 ATGACAAGAGGAATGGATTCAGTGGTTGAACCGATGAGGAACCATGAGAAGTATTTAGATTCTCAGCTATGGCATGCTTGTGCAGGTGGGCTGATCGAATTGCCTACCATCGACTCGAAGGTAGTGTACTTTCCTCAGGGCCATGCCGAACATGCCCAGGAGAATGTTGATTTCGGGGTAGCGCAAATTCCTTCGCTCATACCTTGCAGGGTATCTGGCATAAGACATATGGCTGATTCTGAAACTGATGAGGTTTTTGCTAATATAAGGTTGATTCCATTGAGGAACAATGAATTTAGTTTGGATGATGATGATGAGCTTCTAGGCCACAATGATATTAGGACTCGGGAGAAACCAGCCTCGTTTGCTAAGACGTTGACACAATCTGATGCAAACAATGGTGGAGGATTCTCCGTGCCTCGTTACTGTGCTGAGACAATGTTTCCTCGGTTGGATTACTCGGCGGAGCCGCCTGTTCAGACCATTCTTGCCAAGGATGTTCATGGCGAGATTTGGAAGTTTAGGCATATATACAGAGGGACTCCCCGACGTCATCTTTTGACGACGGGATGGAGTAATTTTGTGAATCAGAAGAAACTTGTTGCTGGGGACTCGATCGTTTTCTTGAGGGCGGAAACTGGTGATCTTTTCATCGGAGTTAGGCGAGCCAAGCGGGGAAATGGTTATGGAATTGATTATGAAACTGGTTGGGATCCAACTAATTCAGCCTCTCCACTTGTGGGGTATTCTGATTTTATGAGGGAGAATGAAGGTAGATTGGTAAGAAGAATCTCAAATGGGAATTCGAGCGGGAGAGTGACGGTAGAATCTGTCATCGAAGCTGCAATGCTTGCTGCCAGTGGCAAGCCCTTCGAGATTGTGTACTACCCGTGCACTGGTACTCCTGAGTTCGTCGTTAAGGCGTCTTGTTTACGATCTGCAATGCAGGTTCATTGGTATCCTGCTATGAGATTCAAGATGCCTTTCGAAACCAAGGATTCGTCTCGGATAAGCTGGTTTATGGGAACTATATCTTCTATTCAGGTAGCTGATCCTGTTCGGTGGCCTGATTCTCCGTGGCGAATGCTGCAGGTGGCATGGGATGAGCCAGATTTACTGCAAAATGTGAAGAGTATCAACCCATGGTTGGTTGAAGTGGTAGTAAACATGCCAGCCATCCATGTCTCTCCGTTCTCGCCACCGAGGAAGAAGCAGCGGTTTCACCCAGCAGAAACTGCTGTATTTGGTCATCTTCCAATGCCATCGTTTTCGACGAACTTCTTCGAAACAACCAGCTCATTACAAAGTGTTACAGGTAATAACATTCCTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGACTCTCTTCACCTGACTTTCAGCTCAGCAAACTAAATTTGGGACCATGTTCTGCTGGTTTTAAGCACCTTGATGAGGCCACACCTCTTCCTGGCAGCCCAGGTGAAAATATGTTCGGAGGCATGAAAAGCCCTGATAATTCTCATTGGCTAACGATGGGAAATAATACCGAAAGCTCGAAAGACAGCAAAGAAACAAAACCGGATCATATCATATTGTTCGGTCAACTCATTCTCCCTAATCAACTGATTTCTAACAGCTGCTCGGCCGATACAACGAATGCATCGTATGAAAACCAAGGGAAATCGTCGAATCCTTCCGACGGTTCTGGTTTATCGTCACAACAGAATGGTTCATTGGAGAATTCATCAGAGGGAGGATCTACCTCGTATAATGGTCACGAAAAAACCGGTTTTAGCTTGAACACTGGTCAATGCAAAGTGTTCATGGAATTCGAGGACATCGGTCGTACTCTTAATCTATCGCTTCTCAGGTCATACGACGAATTGTATGGAAAACTTGCCAATATGTTCGGTCTAGGAAGCTCAGAGATGCTGAATTGTGTTCTTTATGAGGATGCACTCGGTACAACGAAGCAAGCGGGAGACGAGCCTTTCAGCACGTTTCTGAAGACGGCGAGAAAACTAACCATACTTACAGATTCTCGAAGTAGCGACAACAGTAAAACGTAG 2055 45.84 MTRGMDSVVEPMRNHEKYLDSQLWHACAGGLIELPTIDSKVVYFPQGHAEHAQENVDFGVAQIPSLIPCRVSGIRHMADSETDEVFANIRLIPLRNNEFSLDDDDELLGHNDIRTREKPASFAKTLTQSDANNGGGFSVPRYCAETMFPRLDYSAEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAETGDLFIGVRRAKRGNGYGIDYETGWDPTNSASPLVGYSDFMRENEGRLVRRISNGNSSGRVTVESVIEAAMLAASGKPFEIVYYPCTGTPEFVVKASCLRSAMQVHWYPAMRFKMPFETKDSSRISWFMGTISSIQVADPVRWPDSPWRMLQVAWDEPDLLQNVKSINPWLVEVVVNMPAIHVSPFSPPRKKQRFHPAETAVFGHLPMPSFSTNFFETTSSLQSVTGNNIPAGIQGARHTQFGLSSPDFQLSKLNLGPCSAGFKHLDEATPLPGSPGENMFGGMKSPDNSHWLTMGNNTESSKDSKETKPDHIILFGQLILPNQLISNSCSADTTNASYENQGKSSNPSDGSGLSSQQNGSLENSSEGGSTSYNGHEKTGFSLNTGQCKVFMEFEDIGRTLNLSLLRSYDELYGKLANMFGLGSSEMLNCVLYEDALGTTKQAGDEPFSTFLKTARKLTILTDSRSSDNSKT 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7188933 7192355 + Cp4.1LG13g09970.1 Cpe13g00800 479998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00800 684 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 674 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe13g00800 684 CDD B3_DNA 121 222 IPR003340 GO:0003677
Cpe13g00800 684 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe13g00800 684 Gene3D - 320 391 - -
Cpe13g00800 684 ProSiteProfiles PB1 domain profile. 597 677 IPR000270 GO:0005515
Cpe13g00800 684 MobiDBLite consensus disorder prediction 482 521 - -
Cpe13g00800 684 Gene3D - 120 224 IPR015300 -
Cpe13g00800 684 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Cpe13g00800 684 PANTHER AUXIN RESPONSE FACTOR 16 12 674 - -
Cpe13g00800 684 Gene3D - 595 680 - -
Cpe13g00800 684 MobiDBLite consensus disorder prediction 548 590 - -
Cpe13g00800 684 SUPERFAMILY DNA-binding pseudobarrel domain 113 226 IPR015300 -
Cpe13g00800 684 SMART B3_2 122 224 IPR003340 GO:0003677
Cpe13g00800 684 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g02236 Cpe13g00800 CCT
Cpe01g02236 Cpe13g00800 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00219 Cpe-Chr10:1241922 Cpe13g00800 Cpe-Chr13:7188933 0 dispersed
Cpe13g00800 Cpe-Chr13:7188933 Cpe10g00065 Cpe-Chr10:472288 2.23E-75 dispersed
Cpe01g02236 Cpe-Chr1:19019574 Cpe13g00800 Cpe-Chr13:7188933 0 wgd
Cpe13g00800 Cpe-Chr13:7188933 Cpe16g00530 Cpe-Chr16:6226242 0 wgd
Cpe13g00800 Cpe-Chr13:7188933 Cpe19g00413 Cpe-Chr19:3647403 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50440 PF02362 B3 9.10E-21 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00800 - - cmo:103496426 1082.78