Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00816 GTTTTTGGATCATCCGAGCCATCTATTCAGATTATGGGTAAGGAGAAGGTTCACATCAACATTGTGGTCATTGGCCACGTCGATTCTGGCAAGTCGACCACCACTGGTCATTTGATCTACAAGCTTGGAGGCATTGACAAGCGTGTTATTGAGAGAAACACTGGTGTCGATATGTCTTTGAAATCTCTTTTTGATGTTAACGTTTTTGGATCATCCGAGCCATCTATTCAGATTATGGGTAAGGAGAAGGTTCACATCAACATTGTGGTCATTGGCCACGTCGATTCTGGCAAGTCGACCACCACTGGTCATTTGATCTACAAGCTTGGAGGCATTGACAAGCGTGCCGACTGTGCTGTTCTTATCATCGACTCTACTACCGGAGGTTTTGAAGCTGGTATTTCGAAGGATGGGCAGACCCGTGAACACGCCCTTCTTGCCTTCACTCTTGGTGTAAGACAAATGATTTGCTGCTGCAACAAGATGGATGCCACCACTCCCAAGTACTCCAAATCTAGATACGACGAAATTGTGAAGGAAGTTTCTTCCTACCTCAAGAAGGTTGGCTACAACCCAGACAAAATTCCCTTCGTCCCAATCTCTGGATTTGAGGGTGACAACATGATTGAAAGATCCACCAACCTCGACTGGTACAAGGGCCCAACCCTTCTTGAGGCCCTCGACTTGATCCAAGAGCCCAAGAGACCATCTGACAAGCCCCTTCGCCTTCCACTTCAGGATGTCTACAAGATCGGAGGTATTGGCACTGTGCCAGTGGGTCGTGTTGAGACAGGTATTCTGAAACCTGGTATGGTCGTGACCTTCGCCCCCTCTGGACTGACTACCGAGGTAAAGTCTGTTGAGATGCACCATGAAGCTCTCCAAGAAGCCCTCCCTGGTGACAACGTGGGGTTCAACGTGAAGAACGTTGCCGTGAAGGATCTCAAGCGTGGATTCGTTGCCTCAAATTCCAAGGATGATCCCGCCAAGGAAGCTGCCAATTTCACTGCCCAAGTTATCATCATGAACCATCCAGGGCAGATTGGAAATGGTTATGCCCCAGTTCTTGATTGCCATACCTCTCATATTGCCGTTAAATTCTCTGAGATTTTGACCAAGATTGACAGGCGATCCGGTAAAGAACTCGAGAAAGAACCCAAGTTCTTGAAAAACGGCGATGCTGGATTTGTTAAGATGATCCCCACCAAGCCCATGGTGGTGGAAACATTCGCCACATATCCACCACTTGGACGATTTGCCGTGAGGGACATGCGTCAAACAGTGGCCGTCGGTGTTATCAAGAGCGTGGAAAAGAAGGATCCAAGCGGTGCCAAGGTCACCAAGTCAGCTGTTAAGAAATCTGTTCTTTTTCCTGAGATTCAGCCATGGACCACCAAATACTACTGCACTGTTATTGATGCTCCAGGCCATCGTGACTTCATCAAGAACATGATTACTGGTACTTCCCAAGCCGACTGTGCTGTTCTTATCATTGACTCTACTACCGGAGGCTTTGAAGCTGGTATTTCAAAGGATGGGCAGACCCGTGAACACGCCCTTCTTGCCTTTACCCTTGGTATGGATTCCACCACCCCCAAGTACTCTAAAGCTAGATACGACGAAATTGTGAAGGAAGTTTCTTCCTACCTCAAGAAGGTTGGCTACAACCCAGACAAAATCCCCTTCGTCCCAATCTCTGGATTTGAAGGCGACAACATGATTGAAAGATCCACCAACCTTGACTGGTACAAGGGCCCAACCCTTCTCGAGGCCCTCGACTTGATCCAAGAGCCTAAGAGACCATCTGACAAGCCCCTTCGCCTTCCACTTCAGGATGTTTACAAGATCGGAGGTATTGGAACTGTGCCAGTGGGTCGTGTTGAGACGGGTGTTCTTAAACCTGGTATGGTCGTGACCTTCGCCCCCTCTGGACTGACAACTGAAGTAAAGTCTGTTGAGATGCACCATGAAGTTCTCCAAGAAGCTCTCCCTGGTGACAATGTGGGGTTCAATGTTAAGAACGTTGCTGTGAAGGATCTCAAGCGTGGCTACGTTGCTTCAAATTCCAAGGATGATCCTGCTAAGGAAGCTGCCAATTTCACCTCTCAAGTTATCATCATGAACCACCCAGGTCAAATTGGAAATGGTTATGCCCCAGTTCTTGATTGCCATACCTCTCATATTGCCGTTAAGTTCTCTGAGATTTTGACCAAGATTGACAGGCGGTCTGGTAAAGAGCTTGAGAAAGAGCCCAAGTTCTTGAAGAACGGCGATGCTGGATTTGTTAAGATGATACCCACCAAGCCCATGGTGGTGGAAACATTCGCCACATATCCACCACTTGGACGGTTTGCGGTGAGGGACATGCGGCAGACTGTGGCTGTTGGTGTCATCAAGGCCGTTGAGAAGAAGGATCCAAGCGGGGCCAAGGTGACCAAGTCTGCGGCCAAGAAATCAGGGAAGTGA 2466 48.42 VFGSSEPSIQIMGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERNTGVDMSLKSLFDVNVFGSSEPSIQIMGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFATYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAVKKSVLFPEIQPWTTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGMDSTTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPSGLTTEVKSVEMHHEVLQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFATYPPLGRFAVRDMRQTVAVGVIKAVEKKDPSGAKVTKSAAKKSGK 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7275231 7284107 - Cp4.1LG13g09780.1 Cpe13g00816 480014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00816 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 52 IPR027417 -
Cpe13g00816 821 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 698 801 IPR009001 -
Cpe13g00816 821 CDD EF1_alpha_III 695 798 - -
Cpe13g00816 821 SUPERFAMILY Translation proteins 598 693 IPR009000 -
Cpe13g00816 821 Gene3D - 116 233 IPR027417 -
Cpe13g00816 821 Pfam Elongation factor Tu GTP binding domain 84 115 IPR000795 GO:0003924|GO:0005525
Cpe13g00816 821 Pfam Elongation factor Tu GTP binding domain 463 593 IPR000795 GO:0003924|GO:0005525
Cpe13g00816 821 Pfam Elongation factor Tu GTP binding domain 17 52 IPR000795 GO:0003924|GO:0005525
Cpe13g00816 821 Pfam Elongation factor Tu GTP binding domain 116 228 IPR000795 GO:0003924|GO:0005525
Cpe13g00816 821 PANTHER TRANSLATION FACTOR 117 454 - -
Cpe13g00816 821 PANTHER TRANSLATION FACTOR 464 819 - -
Cpe13g00816 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 463 621 IPR027417 -
Cpe13g00816 821 SUPERFAMILY Translation proteins 233 328 IPR009000 -
Cpe13g00816 821 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 16 237 IPR000795 GO:0003924|GO:0005525
Cpe13g00816 821 PANTHER TRANSLATION FACTOR 79 115 - -
Cpe13g00816 821 CDD EF1_alpha_II 602 692 - -
Cpe13g00816 821 PANTHER TRANSLATION FACTOR 12 54 - -
Cpe13g00816 821 CDD EF1_alpha_II 237 327 - -
Cpe13g00816 821 PANTHER ELONGATION FACTOR 1-ALPHA 79 115 - -
Cpe13g00816 821 PANTHER ELONGATION FACTOR 1-ALPHA 464 819 - -
Cpe13g00816 821 Gene3D - 72 115 IPR027417 -
Cpe13g00816 821 Gene3D - 438 600 IPR027417 -
Cpe13g00816 821 Gene3D - 6 68 IPR027417 -
Cpe13g00816 821 Gene3D Translation factors 330 437 - -
Cpe13g00816 821 Gene3D Translation factors 695 802 - -
Cpe13g00816 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 256 IPR027417 -
Cpe13g00816 821 Pfam Elongation factor Tu domain 2 255 320 IPR004161 GO:0005525
Cpe13g00816 821 Pfam Elongation factor Tu domain 2 620 685 IPR004161 GO:0005525
Cpe13g00816 821 Gene3D Translation factors 236 323 - -
Cpe13g00816 821 Gene3D Translation factors 601 688 - -
Cpe13g00816 821 PANTHER ELONGATION FACTOR 1-ALPHA 12 54 - -
Cpe13g00816 821 PANTHER ELONGATION FACTOR 1-ALPHA 117 454 - -
Cpe13g00816 821 Pfam Elongation factor Tu C-terminal domain 329 436 IPR004160 -
Cpe13g00816 821 Pfam Elongation factor Tu C-terminal domain 694 801 IPR004160 -
Cpe13g00816 821 PRINTS GTP-binding elongation factor signature 111 122 IPR000795 GO:0003924|GO:0005525
Cpe13g00816 821 PRINTS GTP-binding elongation factor signature 20 33 IPR000795 GO:0003924|GO:0005525
Cpe13g00816 821 PRINTS GTP-binding elongation factor signature 155 164 IPR000795 GO:0003924|GO:0005525
Cpe13g00816 821 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 333 436 IPR009001 -
Cpe13g00816 821 CDD EF1_alpha_III 330 433 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00816 Cpe-Chr13:7275231 Cpe17g00257 Cpe-Chr17:1686638 0 dispersed
Cpe13g00816 Cpe-Chr13:7275231 Cpe16g00549 Cpe-Chr16:6326649 0 wgd
Cpe13g00816 Cpe-Chr13:7275231 Cpe05g00861 Cpe-Chr5:5660508 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00816 K03231 - csv:101220517 724.931